These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCTTCGAGGAAGATCACGAGGAGAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGCGAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCGGCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGTTTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGAGGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGAANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC] [+] EMBL BX468336 [GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCTTCGAGGAAGATCACGAGGAGAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGCGAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCGGCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGTTTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGAGGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGAANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC] consensusID : consensus_6178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [GGCGAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAGTGGCGGGGCGAAGAAGGGCGGCA] [+] EMBL BX609127 [GGCGAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAGTGGCGGGGCGAAGAAGGGCGGCA] consensusID : consensus_6178#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [GTGTATTCAGAAACGGTAACCCACTGATCTACGAGGGTGATCTTCAGAACGAGCAGTCCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAGTTAACGAGCGTATGTGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACTACGATGAAGACTGTGCCGAGTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGTGAGGTGGACCTGTAC-GGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGTACGATGGTGACATGCACGATCACGAGCGT-GTCATGAA-CTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGCAAAAATCCGCACGGC] [+] EMBL CNS08JD1 [GTGTATTCAGAAACGGTAACCCACTGATCTACGAGGGTGATCTTCAGAACGAGCAGTCCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAGTTAACGAGCGTATGTGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACTACGATGAAGACTGTGCCGAGTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGTGAGGTGGACCTGTAC GGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGTACGATGGTGACATGCACGATCACGAGCGT GTCATGAA CTGGCTCACGTCGCAGGACGTGTT ] [+] EMBL AL933523 [ TGACCACAT CTGTAGGAGCTGGAGCTGATCGACGGCGA GTGGACCTGTACGGGTATCGACTTTGTCAA GTGGCCAGCCTGGACGCGGCAC ACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCA AGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGGTCATGAACCTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGCAAAAATCCGCACGGC] consensusID : consensus_6178#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAG] [+] EMBL BX613217 [GCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6178#0 ------GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGC 54 consensus_6178#3 ------------------------------------------------------------ consensus_6178#1 ------------------------------------------------------------ consensus_6178#2 GTGTATTCAGAAACGGTAACCCACTGATC---TACGAGGGTGATCTTCAGAACGAGCAGT 57 consensus_6178#0 GTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGG 114 consensus_6178#3 ------------------------------------------------------------ consensus_6178#1 -----------------GGCGAGGTGGACCTGTACGGTATCG---ACTTTGTCAAGGTGG 40 consensus_6178#2 CCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAG 117 consensus_6178#0 TGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCT 174 consensus_6178#3 ------------------------------------------------------------ consensus_6178#1 CCAGCCTGGACGCGGCACACAAG-TATGGCGTCACGACGATCCCGTCCCTGGTGTACTAC 99 consensus_6178#2 TTAACGAGCGTATG-TGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACT 176 consensus_6178#0 TCGAGGAAGATCACGAGGA-GAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGC 233 consensus_6178#3 ------------------------------------------------------------ consensus_6178#1 CGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAAC 159 consensus_6178#2 ACGATGAAGACTGTGCCGA-GTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGT 235 consensus_6178#0 GAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCG-CGCAA 292 consensus_6178#3 -------------------------------------GCGATCCGCGGTACGCG-CGCAA 22 consensus_6178#1 TGGCTCACGTCGCAGGACGTGTTCGAGATCAAGA-ACGAAATCGAGGAGGTGAATCGCAA 218 consensus_6178#2 GAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAA 295 * * *** consensus_6178#0 GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCA-AGCGCTTCCCCAGCATCT 351 consensus_6178#3 GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCA-AGCGCTTCCCCAGCATCT 81 consensus_6178#1 GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCA-AGCGCTTCCCCAGCATCT 277 consensus_6178#2 GTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGT 355 ** ******** * * * ** * * ***** * ***** *** **** * * * consensus_6178#0 ACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 409 consensus_6178#3 ACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 139 consensus_6178#1 ACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 335 consensus_6178#2 ACGATGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGT 415 ** ** ****** **** * ** *** * * ***** ** * ** * consensus_6178#0 CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 468 consensus_6178#3 CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 198 consensus_6178#1 CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 394 consensus_6178#2 TCGAGATCAAGAACGCAAAAATCCGCACGGC----------------------------- 446 ** * * ** * ** *** ** * consensus_6178#0 TCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCG 528 consensus_6178#3 TCATCTACACTGC-ATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCG 257 consensus_6178#1 TCATCTACACTGC-ATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCG 453 consensus_6178#2 ------------------------------------------------------------ consensus_6178#0 GCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGT 588 consensus_6178#3 -CATCCGAA--GCAAAACTAAT-GCTAAGCG--AACCG--GCCGGGCGCACTCTC----T 305 consensus_6178#1 -CATCCGAA--GCAAAACTAAT-GCTAAGCG--AACCG--GCCGGGCGCACTCTC----T 501 consensus_6178#2 ------------------------------------------------------------ consensus_6178#0 TTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGA 648 consensus_6178#3 CTTTAGGGTACATATTCTTCCAGTGTAAGC---GTTAGACAGAC--AGAGAAAAAAAAAA 360 consensus_6178#1 CTTTAGGGTACATATTCTTCCAGTGTAAGC---GTTAGACAGAC--AGAGAAAAAAAAAA 556 consensus_6178#2 ------------------------------------------------------------ consensus_6178#0 GGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGA 708 consensus_6178#3 TGCAGCC-----GAACAATCAAGTGCAGCTACGA--TCGTTAGTTGATCG---TGCTCGA 410 consensus_6178#1 TGCAGCC-----GAACAATCAAGTGCAGCTACGA--TCGTTAGTTGATCG---TGCTCGA 606 consensus_6178#2 ------------------------------------------------------------ consensus_6178#0 ANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC 755 consensus_6178#3 TAGCGTGTGGACAAAAG------------------------------ 427 consensus_6178#1 TAGCGTGTGGACAAAAGT-GGCGGGGCGAAGAAGG-GCGGCA----- 646 consensus_6178#2 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||