Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6180 cluster # 6180       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6180#0 length = 783 sequences # 1  
consensus_6180#1 length = 595 sequences # 2  
consensus_6180#2 length = 582 sequences # 2  

consensusID : consensus_6180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence
                              [CAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCACTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACATGGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCAAACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCCGGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGGTGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTGGTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATTCTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTTGCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTGGAGAGGCTGGACGAATTCAAA]

[+] EMBL CNS09GV6             [CAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCACTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACATGGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCAAACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCCGGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGGTGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTGGTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATTCTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTTGCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTGGAGAGGCTGGACGAATTCAAA]


>consensus_6180#0 CAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCG CTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTG CTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCACTGCTCGAGTTCGA TCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGAGGGAGCTGCA CGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCC CGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACATGGTGCGCCGGTTGCAGTC GGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCAAACGATGATGGAACTGAA TCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCCGGCGCACCCGATTGAACG GAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGGTGTACGGGCGACAGGAAA GCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTGGTCGTGTTCGAGGCGTTG GTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATTCTCCGGCACGCCATCGGT TACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTTGCCTGGTGGCCAGAGTGG GAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTGGAGAGGCTGGACGAATTC AAA



consensusID : consensus_6180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence
                              [ATCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCAATTCCTTCATCAGACTCATCATACCGCTCAAATTTGGCGGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAG-AGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATTGCAAATGTTATTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTGCCAGCACCTGCTCGATGAGAAAAGTGTCCGCAGGGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGGGTCGGTTCGGCAACCTCATTGACAAAATCCAAAA]

[-] EMBL BM578497             [ATCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCAATTCCTTCATCAGACTCATCATACCGCTCAAATTTGGCGGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAG AGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATTGCAAATGTTATTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTGCCAGCACCTGCTCGATGAGAAAAGTGTCCGCAGGGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGG                                  ]
[+] EMBL CNS09GV7             [      CTTGCATGGTCTGCGTA TCAAAGCTTTGCAACCGTTCATCTACGAATGCTTGCAATTCCTTCATCAGCCTCATCATACCGCTCAAATTTGGCCGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAGCAGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTGTCCACCGCAGATTGAAAGTTTTTGCAAATGCTATCAAATACGCTGTTAACTAATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTACCAGCACCTGCTCGATGAGAAAAGTGTCCGCA GGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGGTCGTCGGTTCGGCAACCTCATTGACAAAATCCAAAA]


>consensus_6180#1 ATCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGC AATTCCTTCATCAGACTCATCATACCGCTCAAATTTGGCGGATAATCAAATTTCCTCTTG TCAACTGCTTCCTGCAGAGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATA CGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATTGCAA ATGTTATTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAACAAACG GAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTA GCTCTTTGTGCCAGCACCTGCTCGATGAGAAAAGTGTCCGCAGGGCTGACCCTTCCCCAG TGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGA AAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCC AGCAGAACGGCCGCATCGCGGGTCGGTTCGGCAACCTCATTGACAAAATCCAAAA



consensusID : consensus_6180#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 582
fasta sequence
                              [CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGGCACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACACTTTTCTCATCGAGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT]

[+] EMBL BM598185             [CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGGCACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACACTTTTCTCATCGAGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT]
[+] EMBL BM592591             [                 ccgAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAA                                                                                                                                                                                                                                                                                 ]


>consensus_6180#2 CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATG ACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAG CTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAA CCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCC TCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGAC CGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGGCA CTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTC GAGCGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTA GCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACACTTTT CTCATCGAGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6180#0      ------------------------------------------------------------
consensus_6180#2      CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATG 60
consensus_6180#1      ------------------------------------------------------------
                                                                                  

consensus_6180#0      ------------------------------------------------------------
consensus_6180#2      ACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAG 120
consensus_6180#1      -----------------------------------------------------------A 1
                                                                                  

consensus_6180#0      ------CAGCTCGCACAGAGCGAGCAAATCTTC-CTGCAGAATGTGCACAA-TCTGCACA 52
consensus_6180#2      CTGATACAGCTCGCACAGAGCGAGCAAATCTTC-CTGCAGAATGTGCACAA-TCTGCACA 178
consensus_6180#1      TCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCA 61
                              **  *  * * *    * ** ***  *  * *   **  **** *     **

consensus_6180#0      AACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCG 112
consensus_6180#2      AACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCG 238
consensus_6180#1      ATTCCTTCATCAGACTCATCATAC---CGCT-CAAATTTGGCGGATAATCAAATT-TCCT 116
                      *  * *   **  *  * *  *     **** *  **   ** *      *** *  ** 

consensus_6180#0      CCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCA------ 166
consensus_6180#2      CCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACG 298
consensus_6180#1      CTTGTCAACTGCTT--------CCTGCAGAGCGATCAGCTGCTCACGCACAGCGAATGCT 168
                      * *  *  **** *        ****** *     * *  ****  * ** **       

consensus_6180#0      ------------------------------------------------------------
consensus_6180#2      ACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGG 358
consensus_6180#1      ---------------------------------------------------TGCTGCGGT 177
                                                                                  

consensus_6180#0      --CTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGT 224
consensus_6180#2      CACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGT 418
consensus_6180#1      ATACGTTCGCCTGCTTCCTGC-GCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATT 236
                          * ***  * *   **** *   **     *  * *   *   * ***    *   *

consensus_6180#0      TCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATG--ATGTGTTGCAAACGTTTCTCAT 282
consensus_6180#2      TCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATG--ATGTGTTGCAAACGTTTCTCAT 476
consensus_6180#1      GCAAATGTTA-TTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAAC 295
                       * *  *  *  *  *  *   *       * *  *  ** ***  ***  * **   * 

consensus_6180#0      CCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACAT 342
consensus_6180#2      CCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACAC 536
consensus_6180#1      AAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGT 355
                          * * *    *    * ***   * ** *       *   ** * **    **    

consensus_6180#0      GGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCA 402
consensus_6180#2      --TTTTCTCATCG-AGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT----------- 582
consensus_6180#1      TTTTAGCTCTTTGTGCCAGCACCT--GCTCGATGAG---AAAAGTGTCCGCAGGGCTG-A 409
                        *   *   * *     *       *    * * *    ***  *              

consensus_6180#0      AACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCC 462
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      CCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTA--GGCGGTCCAGGA---ACAAGCT 464
                                                                                  

consensus_6180#0      GGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGG 522
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      GCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCAT 524
                                                                                  

consensus_6180#0      TGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTG 582
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      TTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGGGTCGGTTCGGCAACCT--CATTG 582
                                                                                  

consensus_6180#0      GTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATT 642
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      ACAAAATCCAAAA----------------------------------------------- 595
                                                                                  

consensus_6180#0      CTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTT 702
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      ------------------------------------------------------------
                                                                                  

consensus_6180#0      GCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTG 762
consensus_6180#2      ------------------------------------------------------------
consensus_6180#1      ------------------------------------------------------------
                                                                                  

consensus_6180#0      GAGAGGCTGGACGAATTCAAA 783
consensus_6180#2      ---------------------
consensus_6180#1      ---------------------
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)