|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 651 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGATGAATTCTTTTCGTCGCTGTTCAAAAACACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA-GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCAAGGGAACGCTGATGCACGATGTGCTGCGCGTATTCGAACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAATGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTACACCGGCGGACCAAAGTGAACCTCACGTA]
[+] EMBL BM617008 [CCGCCCACGCGTCCGCCCACGCGTCCGGATGAATTCTTTTCGTCGCTGTTCAAAAACACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCAAGGGAACGCTGATGCACGATGTGCTGCGCGTATTCGAACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAATGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTACACCGGCGGACCAAAGTGAACCTCACGTA]
[+] EMBL CNS09E8O [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGGGCTAGGACCTGGCAAGGGAACGCTGATGC ]
[+] EMBL CNS09A3O [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAATTCCGACCGAAGAACGTTGGCCGAAGCATTGCACGGCCGGATACGAGCTACCGGGCCAATGACGGTGGCCACTTATATGCGAGAAGTTTTGCTTAACCCAGCGGCTGGATACTACAGTACAAAGGAGAATGTGTTTGGGACAACTGGAGATTTCATCACCGCGCCGGAAATTGGACAAATTTTCGGCGAGCTGGTAGCCATTTGGTGTATAAATGAGTTACAAAAATTTAACTATGATGGCCATATACAGCTCATCGAGCTAGGACCTGGCA ]
[+] EMBL CNS098J0 [ ACAAAGCTGTTAACAGACGTGCAATAACGGAGCTTAAAAATCTGCGGCGTGATCCACCGAA GAACCTGCCGGCAAT ]
consensusID : consensus_6181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAACACTTTTGCAACCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGCATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGCACTTATATGCGCAGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTTTGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGACATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGCCATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCTGCGCGTATTCGGAACGATT]
[+] EMBL BX469540 [ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAACACTTTTGCAACCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTACTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTGCGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGCATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGCACTTATATGCGCAGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTTTGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGACATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGCCATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCTGCGCGTATTCGGAACGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6181#0 CCGCCCACGCGTCCGCCCACGCGTCC--GGATGAATTCTTTTCGTC-GCTGTTCA-AAAA 56
consensus_6181#1 ----------ATCGCACGAGGTGTCACGAGATGAATTCTTTTCGTCCNCTGTTCACAAAA 50
** * * * *** ***************** ******* ****
consensus_6181#0 CACTTTTGCAAACCTTGCTAAACGCAAATATTGCTGGCAGCGGTCCGGGTCGTGTATTTA 116
consensus_6181#1 CACTTTTGCAA-CCTTGCTAAACGCAAATATTGCTGGCAGCGGCCCGGGTCGTGTATTTA 109
*********** ******************************* ****************
consensus_6181#0 CTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAG-CTTAAAAATCTG 175
consensus_6181#1 CTCGATCACAATGCTACAAAGCTGTTAACAGACGTGCAATAACGGAGGCTGAAAAATCTG 169
*********************************************** ** *********
consensus_6181#0 CGGCGTGATCCACCGAAG-AACCTGCCGGCAA-TTCCGACCGAAGAACGTTGGCCGAAGC 233
consensus_6181#1 CGGCGTGATCCACCGAAGGAACCTGGCGGNAAATTCCGACCGAAGAACGGTTGCCGAAGC 229
****************** ****** *** ** **************** * ********
consensus_6181#0 ATTG--CACGGCC--GGATACGAGCTACCGGGCCAATGA-CGGTGGCCACTTATATGCG- 287
consensus_6181#1 ATTTGCCACGGGCCGGAATACGAGCTACCGGGGCAATNNACGGTGGC-ACTTATATGCGC 288
*** ***** * * *************** **** ******* ***********
consensus_6181#0 -AGAAGTTTTGC-TTAACCCAGC--GGCTGGATACTACAGTACA-AAGGA-GAATGTGTT 341
consensus_6181#1 AGGAAGTTTTGCGTTAANCCAGACGGGCTGGATACTACAGTACACAAGGACGAATGTGTT 348
********** **** **** ******************* ***** *********
consensus_6181#0 TGGGACAA-CTGGAGATTTCATCACCGCGCCGG-AAATTGGACAAATTTTCGGCGAGC-- 397
consensus_6181#1 TGGGACANACTGGAGATTTCATCACCGGGCCGGGAAATTGGACAAATTTTCGGCGGAGAC 408
******* ****************** ***** *********************
consensus_6181#0 -TGGTAGCCATTTGGTGTATAAATGAG-TTACAAAAA----TTTAAC---TATGAT-GGC 447
consensus_6181#1 ATGGTAGCCNTTTGGTGTATAAATGAGGTTACACAAGACAGTTTAACGCTCATGATAGGC 468
******** ***************** ***** ** ****** ***** ***
consensus_6181#0 CATATA-CAGCTCA-TCGAGCTAGGACCTGGCAAGGGAACGCTGAT-GCACGATG-TGCT 503
consensus_6181#1 CATATAACAGGTCACTCGAGCTAGGACCTGGCAAGGGAACGCTGATAGCACGATGGTGCT 528
****** *** *** ******************************* ******** ****
consensus_6181#0 GCGCGTATTCG-AACGATTCGGGCTGTCCAAAGATCGAGTTAGTGTGCATCTGGTGGAAA 562
consensus_6181#1 GCGCGTATTCGGAACGATT----------------------------------------- 547
*********** *******
consensus_6181#0 TGAGCTCCAATTTGCAGCGCCTTCAGGCCGACAAGCTTTGCAACGGGATGGCCCACCGTA 622
consensus_6181#1 ------------------------------------------------------------
consensus_6181#0 CACCGGCGGACCAAAGTGAACCTCACGTA 651
consensus_6181#1 -----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||