These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 938 fasta sequence [TTGTATCCCCTTTTTGCTCCCCAGCAATAGTAAATTCATTCCTATTGCATGTTGGCGTGATGGGTCTTTTAATCTTGACCAGTGTTTAACGTCCCGTTTTAACATGTTTGTTCAAGCTACTAAAGTATCAAGTAATCCCTTCATGTAATCGGTTTGGTGGTGCAGATGAAGCATCCTTTCATCTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTAAGTTACCGGTTTGAAATCTAAATGAACTACGTTTTGTGGATGGCATGTTCCAACGGAGAAATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAGAAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTTGCATCTAATCAAACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAAGTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGTTAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGACAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTATTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAGGCGACAGGTTTTCTTTCGTACTACCTATTAAT--GCCT--ATTGATACCACAAACACACATACACACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTCAAAACTGGTAGAATGTGTATATAGTTACGTTTTCAGCTAAACACGCAACACCTGTATGAAGCATATATTTTAAAATAAATTATTGTTTGCTCACAATGT] [+] EMBL BX624453 [TTGTATCCCCTTTTTGCTCCCCAGCAATAGTAAATTCATTCCTATTGCATGTTGGCGTGATGGGTCTTTTAATCTTGACCAGTGTTTAACGTCCCGTTTTAACATGTTTGTTCAAGCTACTAAAGTATCAAGTAATCCCTTCATGTAATCGGTTTGGTGGTGCAGATGAAGCATCCTTTCATCTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTAAGTTACCGGTTTGAAATCTAAATGAACTACGTTTTGTGGATGGCATGTTCCAACGGAGAAATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAGAAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTTGCATCTAATCAAACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAAGTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGTTAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGACAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTATTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAGGCGACAGGTTTTCTTTCGTACTACCTATTAAT ] [+] EMBL BX618721 [ AAAGTATCAAGTAATCCCTTCATGTAATCGGTTTGGTGGTGCAGATGAAGCATCCTTTCATCTTACTTTTGTGGCACAACATAAGGCCATTATTTGCAACTGGTATGAATTTTTAACTAAGTTACCGGTTTGAAATCTAAATGAACTACGTTTTGTGGATGGCATGTT ] [+] EMBL BX611302 [ CAAACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAAGTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGTTAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGACAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTATTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAGGCGACA GTTTTCTTTCGTACTACCTATTAAT GCCT ATTGATACCACAAACACACATACACACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTCAAAACTGGTAGAATGTGTATATAGTTACGTTTTCAGCTAAACACGCAACACCTGTATGAAGCATATATTTTAAAATAAATTATTGTTTG ] [+] EMBL BM627051 [ ccgtgtggTATCAATAGGCATTAATAGGTAGTACGAACACACATACACACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTCAAAACTGGTAGAATGTGTATATAGTTACGTTTTCAGCTAAACACGCAACACCTGTATGAAGCATATATTTTAAAATAAATTATTGTTTGCTCACAATGT] consensusID : consensus_6182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGCCCACGCGTCCGCTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTAAGTTACCGGTTTGAAATCTAAATGAACCACGTTTTGTCGATGGAATGTTCCAACGGAGAAATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAGAAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTTTGCATCTAATCAAACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAAGTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGTTAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGGCAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTATTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAGGCGACAGTTTTCTTTCGTACTACCTATTAATGCCTATTGATACCACAAACACACATACACACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTCAAAACTGGTAGAATGTGTATATAGTTACGTTTTCA] [+] EMBL BM630961 [CCGCCCACGCGTCCGCTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTAAGTTACCGGTTTGAAATCTAAATGAACCACGTTTTGTCGATGGAATGTTCCAACGGAGAAATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAGAAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTTTGCATCTAATCAAACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAAGTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGTTAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGGCAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTATTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAGGCGACAGTTTTCTTTCGTACTACCTATTAATGCCTATTGATACCACAAACACACATACACACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTCAAAACTGGTAGAATGTGTATATAGTTACGTTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6182#0 TTGTATCCCCTTTTTGCTCCCCAGCAATAGTAAATTCATTCCTATTGCATGTTGGCGTGA 60 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 TGGGTCTTTTAATCTTGACCAGTGTTTAACGTCCCGTTTTAACATGTTTGTTCAAGCTAC 120 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 TAAAGTATCAAGTAATCCCTTCATGTAATCGGTTTGGTGGTGCAGATGAAGCATCCTTTC 180 consensus_6182#1 ------------------------------------------CCGCCCACGCGTCCG--- 15 * * * ** *** consensus_6182#0 ATCTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTA 240 consensus_6182#1 --CTTACTTTTGTGGCACAACATAAGCCCATTATTTGCAACTGGTATGAATTTTTAACTA 73 ********************************************************** consensus_6182#0 AGTTACCGGTTTGAAATCTAAATGAACTACGTTTTGTGGATGGCATGTTCCAACGGAGAA 300 consensus_6182#1 AGTTACCGGTTTGAAATCTAAATGAACCACGTTTTGTCGATGGAATGTTCCAACGGAGAA 133 *************************** ********* ***** **************** consensus_6182#0 ATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAG 360 consensus_6182#1 ATGCATATAAAAGTCCTCCCTGCACATTCTGCATTAAAGTCAATTTTCCAGTTAAGAAAG 193 ************************************************************ consensus_6182#0 AAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTT-GCATCTAATCAA 419 consensus_6182#1 AAATCGTGTGCGTGTATGCCAACGAAAAGAAGATGAGTTTTTTTTTTTGCATCTAATCAA 253 *********************************************** ************ consensus_6182#0 ACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAA 479 consensus_6182#1 ACAATGTCGTTTCCCTTTACGGTGCGTTTGGGAGAGAGAAAGTATAAAAAAGAACTGTAA 313 ************************************************************ consensus_6182#0 GTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGT 539 consensus_6182#1 GTTTCCGTGCGTGCATGTTCAATACATTATAATAACAGTAGATAAGCTAATGGAGAACGT 373 ************************************************************ consensus_6182#0 TAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGA 599 consensus_6182#1 TAAGAAGCCGAACAATAATATAATGGATTCATTATTCTAACGAAATCATAAAGCGAACGG 433 *********************************************************** consensus_6182#0 CAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTA 659 consensus_6182#1 CAGTGTAACGGTGAAGTATAACGTAGCCCATGGTATAGTTTCGCTTAGCACAGTGAGTTA 493 ************************************************************ consensus_6182#0 TTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAG 719 consensus_6182#1 TTACAATTTCGAGCGGCTATAAACGTGTAAGGATGGCAGAATAGATCTAATCTATTTGAG 553 ************************************************************ consensus_6182#0 GCGACAGGTTTTCTTTCGTACTACCTATTAATGCCTATTGATACCACAAACACACATACA 779 consensus_6182#1 GCGACAG-TTTTCTTTCGTACTACCTATTAATGCCTATTGATACCACAAACACACATACA 612 ******* **************************************************** consensus_6182#0 CACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTC 839 consensus_6182#1 CACACAGATTGTTGAATATTGTTAAGTTTCAAAGTGAAGTTCGTTTGCTTTCTTGGGTTC 672 ************************************************************ consensus_6182#0 AAAACTGGTAGAATGTGTATATAGTTACGTTTTCAGCTAAACACGCAACACCTGTATGAA 899 consensus_6182#1 AAAACTGGTAGAATGTGTATATAGTTACGTTTTCA------------------------- 707 *********************************** consensus_6182#0 GCATATATTTTAAAATAAATTATTGTTTGCTCACAATGT 938 consensus_6182#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||