These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6183#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 404 fasta sequence [AATATCTCATGTTCTGCATAACGCAAATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACT-GGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG] [+] EMBL AGA281777 [AATATCTCATGTTCTGCATAACGCAAATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACT GGTCGCGGAAGTTCCGACGCAGCT ] [+] EMBL AGA282708 [ AATAAGTAATGCTTGAAATTCGTACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAG ] [+] EMBL AGA285877 [ TACGAACGCCTTCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATTCATTGCTGAATTCGGTTTGCACCGCCGCAACCTTGCACAACAGCATGCTGGTGGGAAAAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGTGCACTTCGGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGACAACCAGACCAAAGTCCTCGAAGTTGGTGGCCCCTTCGTACATCACCACCGCGCCAGTGTTGGTCAAGGCAAACTGGGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG] consensusID : consensus_6183#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTCGGTGCGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGGAACTTCCGCGACC] [+] EMBL AGA280080 [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTCGGTGCGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGGAACTTCCGCGACC] [+] EMBL AGA281080 [CAACTTCGTGGCCGACTACGCGACCGTGTACAGCCCGCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTTCGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACGGTTGATGCACTCCGCCGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGCAGCAGGTCGAGCTGAACCGGCGCTGGGATACGACCGACGAGGATGTGCCGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6183#0 AATATCTCATGTTCTGCATAACGCAAATAAGTAAT--GCTTGAAATTCGTACGAACGCCT 58 consensus_6183#1 -----------------------CAACTTCGTGGCCGACTACGCGACCGTGTACA-GCCC 36 *** * ** ** *** * *** consensus_6183#0 TCTACTAAACCGCTTCATTGCACGCCAGGTAGGTACCGGGCACAGGCACAAATATGTATT 118 consensus_6183#1 GCGGCTGGTCAACCTGAACGTGCACCATCTGCTGCACATGTACGAGGAGACGTGCCGGTT 96 * ** * * * * * * *** * * * ** * * * * ** consensus_6183#0 CATTG--CTGAATTCGGTTTGCACCGCCGCAACCTTGCAC-AACAGCATGCTGGTGGGAA 175 consensus_6183#1 CGGCGAGCTGCACACCATCTCGGCCTACCCGTTCGTGCCCCGACAGCGCGACGCTAGACG 156 * * *** * * * * ** * * * *** * ***** * * * * consensus_6183#0 AAGCGCGCAGCACATGCTGCTCCAAGCTGCTCATGACGGCAGAGTAAATGT--GCACTTC 233 consensus_6183#1 GTTGATGCACTCCGC-CGGGTACAGTCTGTCGCAGACGGTCCAACGGCTGCTGGAGCTGC 215 *** * * * * ** *** ***** * ** * ** * consensus_6183#0 GGTCGAACAAAACGGATCGGAGAACGCGGGCACCTGTCTGGTGAAGGTGTACCCATGGAC 293 consensus_6183#1 AGCAGGTCGAGCTGAACCGG----CGCTGGGATACGACCGACGAGGATGTGCCGTCGGTG 271 * * * * * * *** *** ** * * * * ** * *** ** ** consensus_6183#0 AACCAGACCAAAGTCCTCGAAGT--TGGTGGCCCCTTCGTACA--TCACCACCGCGCCAG 349 consensus_6183#1 ---CGGACGGTCGGCCTCGACACGATCGCGACCATTCGGCGCGGGTTCCAGCTGCGTCGG 328 * *** * ****** * * * ** * * * * * * *** * * consensus_6183#0 TGTTGGTCAAGGCAAACTGGTCGCGGAAGTTCCGACGCAGCTGGAACCCGCGCCG 404 consensus_6183#1 AACTT-CCGCGACC----------------------------------------- 341 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||