These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 876 fasta sequence [TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG-GGGCTCTAAAATAAAAAAG-TCTTTCTAACACTAATA-GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAA-AAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTTGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATCATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCGCCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACCGCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC] [+] EMBL CNS08OP3 [TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG GGGCTCTAAAATAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTGTACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAA AAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTTGCAATTTCCGCACTCACCACGGTA ] [+] EMBL CNS08HW7 [ tGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG GGGCTCTAAAAAAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTTTGGCGGGGTCTTCTCACGAAGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAACACGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCCGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTGGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATCATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCGCCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACCGCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC] [+] EMBL CNS08LPS [ ATTTGG TTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAGAGGGCTCTAAAATAAAAAAGCTCTTTCTAACACTAATAGGGACACATTACCTGGGCCATTATAAg ] [+] EMBL CNS0905M [ TAAAAG GGGCTCTAAAATAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCG ] consensusID : consensus_6191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCTAACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCCCGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCATGGACGAATACGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCCAAGTAACATGAACGATAATACAAATAGTAAGTAAAG] [+] EMBL BM622352 [CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCTAACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCCCGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCATGGACGAATACGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCCAAGTAACATGAACGATAATACAAATAGTAAGTAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6191#0 -------------TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTA 47 consensus_6191#1 CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTA 60 ************* *** *************************** consensus_6191#0 ATCAAAACAGTGCCTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAA--GTCTTTCT 105 consensus_6191#1 ATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCT 120 ************ ************************************* ******** consensus_6191#0 AACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCT 165 consensus_6191#1 AACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCT 180 ************************************************************ consensus_6191#0 GTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCA 225 consensus_6191#1 GTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCA 240 ********* ************************************************** consensus_6191#0 ATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGC 285 consensus_6191#1 ATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCC 300 ********************************************************** * consensus_6191#0 CGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATT 345 consensus_6191#1 CGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATT 360 ********* ******************************************* ****** consensus_6191#0 TCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTG 405 consensus_6191#1 TCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGT--GGCGGGGTCTTCTCACGTGGAGCGTG 418 ******************************** ************************** consensus_6191#0 GCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAG 465 consensus_6191#1 GCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCAT 478 ***** ******************************* **** * * * ** consensus_6191#0 AAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACC 525 consensus_6191#1 GGACGA-ATACGGAGGT-AGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCC 536 *** ** * * * * * ** * * * * *** ** consensus_6191#0 GAAAAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGC 585 consensus_6191#1 AAG-----TAACATGAACGA-TAATACAAAT-AGTAAGTAAAG----------------- 572 * * * *** * * * *** ** * * consensus_6191#0 AGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATG 645 consensus_6191#1 ------------------------------------------------------------ consensus_6191#0 TTTTTTGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATC 705 consensus_6191#1 ------------------------------------------------------------ consensus_6191#0 ATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCG 765 consensus_6191#1 ------------------------------------------------------------ consensus_6191#0 CCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACC 825 consensus_6191#1 ------------------------------------------------------------ consensus_6191#0 GCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC 876 consensus_6191#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||