These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1274 fasta sequence [CCGCGGACGCGTGGGGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTG-AATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCCTTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCCGGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCGAGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCATCGATTCTGATCTGCTACCAGAACCTAACGAAACC] [+] EMBL BM610690 [CCGCGGACGCGTGGGGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTG AATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAA ] [+] EMBL BM604969 [ ccgCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAACTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTAAGCAGGCCACCGCCGAAACATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTGGAAAAGGAGCATAAAGAAGCGCTGGCCAGATTGGAAACGACCGATCCGGAACTGTTCGCCTTTTTGAAGAAGAATGACGAAAAACTGCTGAAATTCGGCCAGCTGGGCGGAAGCGATTCGGAATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCCT ] [+] EMBL BM597238 [ ccgACGAATTGCCGGACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGCAAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCGACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCAACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTTTCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTGAAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTGTACCTTGGGCCGGCCCTTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCCGGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCGAGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCATCGATTCTGATCTGCTACCAGAACCTAACGAAACC] consensusID : consensus_6201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTGTTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAACAGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGGATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATGGCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGGTAAGAAGGTCCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAACTAAACCGAGTCA] [+] EMBL BM600659 [CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTGTTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAACAGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGGATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATGGCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTGTCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAGCTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATGAGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAGAGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACAGCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGAAAACGAAGAAGGGTAAGAAGGTCCTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAACTAAACCGAGTCA] consensusID : consensus_6201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [ACCCGGTCAGGCTCAACGGCANGGAGTCGAAGAANACGAAGGGTAAGCAGGCCACCGCCGCAAAAATCCGACAAAGAGATAGAAGAGCCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATACACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGGAGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCAATTTAGTAGACACCGCAACATAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAAATACGTACTAATAAGTATACTTACCAGGCACGGGCAGCAGTAGTAGTACTAAATACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAATCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCGAAATCGAA] [+] EMBL AL933205 [ACCCGGTCAGGCTCAACGGCANGGAGTCGAAGAANACGAAGGGTAAGCAGGCCACCGCCGCAAAAATCCGACAAAGAGATAGAAGAGCCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATACACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGGAGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCAATTTAGTAGACACCGCAACATAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAAATACGTACTAATAAGTATACTTACCAGGCACGGGCAGCAGTAGTAGTACTAAATACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAATCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCGAAATCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6201#0 ------------------------------------------------------------ consensus_6201#1 CCGGCACCACCGGCAGGAGAAAACATCCTCAAAAATACGCTTTTTCCGTTTGTTTAACTG 60 consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ------------------------------------------------------------ consensus_6201#1 TTTTCTCGTTATAATTACATTTTAGTGTGGTTCTTCACAACTTCAAGATGAAGATCAAAC 120 consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ------------------------------------------------------------ consensus_6201#1 AGTCAAAGAAAAAGGAAGACTTCCAGAACATGTCCCTGGACAACTTCTTGGACAACATGG 180 consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ------------------------------------------------------------ consensus_6201#1 ATGCAGACGTTGGAGACGATGAGCAAGAGGCCAAACCGAAGAGTAAACTTAAATCTAATG 240 consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ----------------CCGCGGACGCGTGG---GGGGCGACATAAAGAAAGCGAAATCTG 41 consensus_6201#1 GCATAGAAAAGGCCAAACACAAACAGGAAGCAAAGGGCGACATAAAGAAAGCGAAATCTG 300 consensus_6201#2 ------------------------ACCCGGTCAGGCTCAACGGCANGGAGTCGAAG---A 33 * * * ** * * * **** consensus_6201#0 TCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAG 101 consensus_6201#1 TCGGGAAAGTAAAGAAAGTTGCTGCAAGCACGGCGGAACCGGACGAAGAAGTGAACGGAG 360 consensus_6201#2 ANACGAAGGGTAAGCAGGCCACCGC-----CGCAAAAATCCGACAAAGAGATAGA-AGAG 87 *** * *** * * * ** ** ** * *** **** * * *** consensus_6201#0 CTGAAGAGCAAAAGTCTAAGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATG 161 consensus_6201#1 CTGAAGAGCAAAAGTCTAGGAAGACGAAAAAGGTCAAGTCCGTCGATGCCGAGCAAAATG 420 consensus_6201#2 CCACACACAGAGAGCGCCGGATACTGCTCTGGACACGGAAAAGTGTTGCCGAATATGATA 147 * * * * ** ** * * * * ****** * ** consensus_6201#0 AGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAG 221 consensus_6201#1 AGGCAATGAACGGCAAAGTGAAGAAAGGGAAAAAATTGAAGTCCGAAGCACAGCGGCCAG 480 consensus_6201#2 CACGACAGTAATGAAAAAAATTACCTCAAACTGCACGGAGAAAAGGAGCNCAAAAGAGGG 207 * * * * *** * * ** * *** ** * * consensus_6201#0 AGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACA 281 consensus_6201#1 AGCTGAATGGAAAAGAGAAGAAAAAGAAACGCAAACTGGCCGAGCCAGAGGAAGCGGACA 540 consensus_6201#2 AGTGGAATATAGGAGGCAGAAGGGAGGCATATACAACACATTTATCA-ATTTAGTAGACA 266 ** **** * ** * * ** * * * ** * ** **** consensus_6201#0 GCGATGACGGTTCCGACCATGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGA 341 consensus_6201#1 GCGATGACGGTTCCGACCACGATGCTGCCGGCTCGAATGCGAACAGCGTATTGAAGAAGA 600 consensus_6201#2 CCG-CAACA-TAAGTATCACGTTACAACATACACACACATATTCAGAAACGAGACGAAAA 324 ** ** * * ** * * * * * * * *** ** *** * consensus_6201#0 AAACGAAGAAGGTTAAGAAGGTAACTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAA 401 consensus_6201#1 AAACGAAGAAGGGTAAGAAGGTC-CTGAGCAGGCTGAGATGAATGGTAAAAAGAAAAAAC 659 consensus_6201#2 ATACGTA-----CTAATAAGTATACTTACCAGGCACGGGC-AGCAGTAGTAGTACTAAAT 378 * *** * *** *** ** * ***** * * *** * * *** consensus_6201#0 CTAAAACCGAGTCACAACCCGTCCAGCTCAACGGCAAGGAGTCGAAGAAAACGAAGGGTA 461 consensus_6201#1 T--AAACCGAGTCA---------------------------------------------- 671 consensus_6201#2 ACTACTACAAAGTATGCTTTCTATGATGCTCTAGACAGAGAACAAGAAAAACAAAAAAAA 438 * * * * consensus_6201#0 A-GCAGGCCACCGCCGAAAAATCCGACAAAGAGTTGACAAAGTCGAGCATGAAACAGGTG 520 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 TCATAACTCGTATTTGGCGGGTATTCCAAAACTTTAATAACGTATTAGACGCTAAAACCG 498 consensus_6201#0 GAAAAGGAGCATAAAGAAGCGCTGGCCAGATTAGAAACGACCGATCCGGAACTGTTCGCC 580 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 AAATCGAA---------------------------------------------------- 506 consensus_6201#0 TTTTTGAAGAAGAATGACGAAAAACTGCTGAATTCGGCCAGCTGGGCGGAAGCGATTCGG 640 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 AATTCTCCGACTCGGAGAATGAGGCTGAAGACGAGGAGGGAGCTGTGCACGAATTGCCGG 700 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ACAAGCTGGACGTTGCTAGTGACGAGAGCGACTTTGATCCTAATGAGGATGAAGACGAGC 760 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 AAGGTCCCGGTGAGGTGGACGATGAAGATGAAGACGGTGAGGAAGAGGAGAAAGCCGCCG 820 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ACGATGACGATGGCACGCCGGGCAAGAGGGTTACGTTTAAAATGCTGAAAGCATGGACCA 880 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 ACGATCTGACTACGCTGCCAATAAAGCACGTTCACGGTATCCGCAACATTTGCAAAGCTT 940 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 TCAATTCGGCCCTGTACACCGTGACGGGAGATAAGAGCGTTATCCCGCCGTACCGCGTTG 1000 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 AAGGTTCGGCTATGTTTAACGGCATCGTACAAACGTGCGTTCTTTACCTTGGGCCGGCCC 1060 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 TTCGGAGCTATCTGGCATTGACCGAGAAGCGACAGTTTAAGGATCTGAAGAATGATTTCC 1120 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 GGTTCAAGAAGGTGAGGGCAAGCATAAAGACATACCTGATCGATCTGACCAACCTGCTCG 1180 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 AGAACGTCTCTTCGTCGCACATCATGTCCGTGCTGCTGAAACACTTGCACGAGTTTTCAT 1240 consensus_6201#1 ------------------------------------------------------------ consensus_6201#2 ------------------------------------------------------------ consensus_6201#0 CGATTCTGATCTGCTACCAGAACCTAACGAAACC 1274 consensus_6201#1 ---------------------------------- consensus_6201#2 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||