These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1527 fasta sequence [CCGCGGACGCGTGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTCAAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGCACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTGGGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCCACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATACCGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATC] [+] EMBL BM654298 [CCGCGGACGCGTGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGC ] [+] EMBL BM582835 [ ccgCGCATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTCAAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGCACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTGGGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCCACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTT ] [+] EMBL BM585691 [ ccGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAA GGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATACCGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATC] consensusID : consensus_6205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGGTGTGCACATACCCGGCTCGCCGTACCGCATC] [+] EMBL BM656144 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGGTGTGCACATACCCGGCTCGCCGTACCGCATC] consensusID : consensus_6205#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACA] [+] EMBL BM638297 [CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6205#0 ------------CCGCGGACGCG-TGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACC 47 consensus_6205#2 CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACC 60 consensus_6205#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCC--GGCGGTCCGGGTCTGG---AGC 55 *** * * * **** * ** * * * * * consensus_6205#0 ATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGC-CGACCGCCCCCGGCGAGTAC 106 consensus_6205#2 ATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGC-CGACCGCCCCCGGCGAGTAC 119 consensus_6205#1 ACGGCGAACAGGGCG-TACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGC 114 * * * * *** * *** * ** * ** ** ** * **** * consensus_6205#0 AAAATCTCCGTCCGCTTTGGTGACA--AGCATATCAAGGGATCGCCCT---ACTTCGCGA 161 consensus_6205#2 AAAATCTCCGTCCGCTTTGGTGACA--AGCATATCAAGGGATCGCCCT---ACTTCGCGA 174 consensus_6205#1 ACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCA-GAGATCGAGTTCAAGGATCGCAA 173 * * ** ** * * * * * **** ** * ***** * **** * consensus_6205#0 AGATCACTGGCGAGG-GCCGCAAGCGTAACCAG-ATTTCGGTCGGCTCCTGCTCGGAGGT 219 consensus_6205#2 AGATCACTGGCGAGG-GCCGCAAGCGTAACCAG-ATTTCGGTCGGCTCCTGCTCGGAGGT 232 consensus_6205#1 GGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTT 233 ** ** * * * * *** *** * * ** ** * ** * * consensus_6205#0 GACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGAT--CCA- 276 consensus_6205#2 GACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGAT--CCA- 289 consensus_6205#1 GAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCAT 293 ** * * ** * * ** ** * * * * ** **** *** consensus_6205#0 -GGCTCCGTCCG--GGCTGGAGGAGCCGTGCTTCCTGA---AACGTATGCCCACCGGCAA 330 consensus_6205#2 -GGCTCCGTCCG--GGCTGGAGGAGCCGTGCTTCCTGA---AACGTATGCCCACCGGCAA 343 consensus_6205#1 GGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAA 353 *** * ** *** **** * * **** ** * *** * * *** consensus_6205#0 CATCG----GCATCTCGTTCAC---------GCCGCGCGAGA--TTGGCGAGCACACCGT 375 consensus_6205#2 CATCG----GCATCTCGTTCAC---------GCCGCGCGAGA--TTGGCGAGCACACCGT 388 consensus_6205#1 GCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGT 413 * * * * ** * *** * **** *** ** * * *** consensus_6205#0 G---TCGGTGAAGCGTTTGGGCAAGCACATCG-CCAACTCACCGTTCAAGGTGAACGTGT 431 consensus_6205#2 G---TCGGTGAAGCGTTTGGGCAAGCACATCG-CCAACTCACCGTTCAAGGTGAACGTGT 444 consensus_6205#1 TGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTC 473 * *** ** * * ** *** ** * ** ** * * * consensus_6205#0 GCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATC--GTGACGGGCAACGCGCTGAA-GG 488 consensus_6205#2 GCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATC--GTGACGGGCAACGCGCTGAA-GG 501 consensus_6205#1 G---GTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGG 530 * * *** ***** ** ** * * ** * * * * ** ** consensus_6205#0 AGGGCAAA-ACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGT 547 consensus_6205#2 AGGGCAAA-ACGCACCAGGACA-------------------------------------- 522 consensus_6205#1 TGTGCACATACCCGGCTCGCCGTACCGCATC----------------------------- 561 * *** * ** * * * * consensus_6205#0 GGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGAC 607 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTC 667 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 AAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGC 727 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 ACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTG 787 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCC 847 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 ACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGC 907 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 CTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTA 967 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 CAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATAC 1027 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 CGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACC 1087 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGA 1147 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTC 1207 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATAT 1267 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 TCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGA 1327 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 GGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCG 1387 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 TAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGA 1447 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 CGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCG 1507 consensus_6205#2 ------------------------------------------------------------ consensus_6205#1 ------------------------------------------------------------ consensus_6205#0 AGAACGGCATCCACGCGATC 1527 consensus_6205#2 -------------------- consensus_6205#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||