These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 690 fasta sequence [CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTTCATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG-AAAAACATGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATC] [+] EMBL BX620620 [CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTTCATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGNGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCTTCAAACGATGATCAGCAGCTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCAAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTCGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCATTTTACCGCTCCTTACAGTAGTAGCGGACTGAGCCGGCGATTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGAGGACCCGCCGAGCCGGTGCGCTTCACGAAAAAACATGACATTCTTCNCCAATCGAAAGCAAAGCTATGAAAAAGACANCCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATC] [+] EMBL BM583579 [ ccgcaaACATCTACAGCCGGTTTGATTTTCAAATCGCAAACCACCAATTCAAAACGTTCATTAAATGGGTTAAAGTGGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCTCCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG AAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGG ] [+] EMBL CNS08G5O [ TTTCTGCAACAATTATTCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGAAATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGATCAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTGTTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTATTTGAATCCCGGAGTTTGAAAACCACCGGACTGCAGATACGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAAGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCA CGAGGTGGACCCGTCGAGCCGGTGCGCTTCACG AAAAACATGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTG ] [+] EMBL CNS08SAJ [ TTTCTGCAACAATTATTCCCGCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCT ] consensusID : consensus_6207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [ATCCCCCGAGGTTAGTTTCCCGCTTCATCCCGAACACTGCTCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAACGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGCATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACATAACGCCCTGGCAGCTGGTGTGGCCC] [+] EMBL AL933136 [ATCCCCCGAGGTTAGTTTCCCGCTTCATCCCGAACACTGCTCACCGTTGGATAAATCAGTGCGGAGTGTTTGAATCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATTGTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAACGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGTCGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACATGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGACGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGCATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACATAACGCCCTGGCAGCTGGTGTGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6207#0 CATATCNNACATCTCCAGTCGGTTTGATTTTCNAATCGCAAACCACCAACTCAAAACGTT 60 consensus_6207#1 ------------------------------------------------------------ consensus_6207#0 CATTAAATGGGATAAAGTAGAATTCCACCAAATAAAACCCTTTCTGCAACAATTATCCCC 120 consensus_6207#1 ------------------------------------------------------------ consensus_6207#0 GCACACACTGGGAAGCGTAACGACCACCTGCAGCACAATCACGCTTATCAGTGTGATGGA 180 consensus_6207#1 ------------------------------------------------------------ consensus_6207#0 AATCTTTCCGTGTGGTTTGTTTCGTACGGCACAGCAAACCAACCACCATCATACGATGAT 240 consensus_6207#1 ------------------------------------------------------------ consensus_6207#0 CAGCAACTGGACGGCTCATCAGTAGCGTTCACCCAGAGGACCCGTACGTACCAAATGTTG 300 consensus_6207#1 ---------------------------------------------ATCCCCCGAGGTTAG 15 * ** * * * consensus_6207#0 TTTCCCGCTTCATCCCGAACACTGCTCCACCGTTGGATAAATCAGTGCGGAGTGTTTGAA 360 consensus_6207#1 TTTCCCGCTTCATCCCGAACACTGCTC-ACCGTTGGATAAATCAGTGCGGAGTGTTTGAA 74 *************************** ******************************** consensus_6207#0 TCCCGG-AGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATT 419 consensus_6207#1 TCCCGGCAGTTTGAAAACCACCGGACTGCAGATCCGGCAATTAGGTGCAAGTGCTTCATT 134 ****** ***************************************************** consensus_6207#0 GTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAA 479 consensus_6207#1 GTTCGCTGGAGTGCAATTTACCGCTCCTTACAGTAGTAGCGGGCTGAGCCGGCGTTTGAA 194 ************************************************************ consensus_6207#0 -GGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGAAGTATTCAAATATGTTACCGT 538 consensus_6207#1 CGGAGCAGCAGACGATCAGTAGTGGATACAGTAGCAAGACGTATTCAAATATGTTACCGT 254 ************************************** ******************** consensus_6207#0 CGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACA 598 consensus_6207#1 CGCACGAAACGATGGCGCAGCGAGGTGGACCCGTCGAGCCGGTGCGCTTCACGAAAAACA 314 ************************************************************ consensus_6207#0 TGACATTCTTCACCAATCGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGA 658 consensus_6207#1 TGACATTCTTCACCAATAGAAAGCAAAGCTATGAAAAAGACAATCATACATTAAGGCTGA 374 ***************** ****************************************** consensus_6207#0 CGGAAACGCTCGACAAGCCGTTGGTGTTTATC---------------------------- 690 consensus_6207#1 CGGAAACGCTCGACAAGCCGTTGGTGTTTATCTTCGCCTGGCTACAGGCGTCCGAAAAGC 434 ******************************** consensus_6207#0 ------------------------------------------------------------ consensus_6207#1 ATCTGGCAAAGTACGCCGACTTCTACCTGGACCAGGGGTTCGAAGTGCTGTGCGTCCACA 494 consensus_6207#0 -------------------------- consensus_6207#1 TAACGCCCTGGCAGCTGGTGTGGCCC 520 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||