These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 887 fasta sequence [CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAACAGCTCGTACGTGGAGGGGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGGGCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGCGAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAACCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATATACCTA] [+] EMBL BM650599 [CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAACAGCTCGTACGTGGAGGGGCACAAGCACAACATT ] [+] EMBL BM592326 [ ccgcGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAATTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATAC ] [+] EMBL BM628325 [ ccgGCAGAAAGTTGAGCAAGAAACGAGATCCGAGACACAACGATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTTCCAGCGGAACACCCGAAGGATCATTCCGAGTCCTCCGGCTCCTCGTCCGAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGCCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTAGTGTACGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGCAACGATACGCACCTCGACCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCTCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGA ] [+] EMBL BM605903 [ ccgGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGT GAACA TTTCGCAAACCAACAGCTCGTACGTGGAGGTGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGGGCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGCGAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAACCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATATACCTA] consensusID : consensus_6211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GCAGAATCGCCCGAGGTTACGCAAAAGTTGAGCAACAAACGAGATCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAACACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCAAGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACGCGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACTACATCCGCGTGTGTGCGAAACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTAGGATCCATATAAGGACCGGGGCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANCACGTCATCNGGTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTGGNTTANGTGTNCGCCNCCNGGCAGGGGAAAAAACCGGGGAGCAAGAAAGCCTGGTNGCCTATACCCGGTCGAANAATCGTCTGGGAGGCGAAATTATGGCAAGAAACCGCCCAANGAAGNTTANCCAAAGCTGCTGCCGAAACGCCT] [+] EMBL AL933132 [GCAGAATCGCCCGAGGTTACGCAAAAGTTGAGCAACAAACGAGATCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAACACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCAAGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACGCGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACTACATCCGCGTGTGTGCGAAACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTAGGATCCATATAAGGACCGGGGCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANCACGTCATCNGGTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTGGNTTANGTGTNCGCCNCCNGGCAGGGGAAAAAACCGGGGAGCAAGAAAGCCTGGTNGCCTATACCCGGTCGAANAATCGTCTGGGAGGCGAAATTATGGCAAGAAACCGCCCAANGAAGNTTANCCAAAGCTGCTGCCGAAACGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6211#0 CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCC 60 consensus_6211#1 ----------GCAGAATCGCCCGAGGTT--ACGCA-AAAGTTGAGCAACAAACGAGATC- 46 * * * * * **** *********************** consensus_6211#0 GAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCG 120 consensus_6211#1 GAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCG 106 ************************************************************ consensus_6211#0 TATGGT-GTGCGG-TGGTGGTGGTGTGCTGTGTCG-TGGCTGGCCCACT-CCCAGCGGAA 176 consensus_6211#1 TATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAA 166 ****** ****** ********************* ************* ********** consensus_6211#0 CACCCGAATGAT-CATT-CCGAGTCCT---CCGGCTCCTCGTCCC--AGGAGAAAGATCA 229 consensus_6211#1 CACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCA 226 ************ **** ****** * * * ******** ** ************ consensus_6211#0 AGGCTAC--CCGCTCAACTC--GCTGTACAGT-CCGCTCGAGTA-CGGTGCGACGGTGGA 283 consensus_6211#1 AGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACG 286 ******* * ******** ********* ********** * * * * ** consensus_6211#0 GAGTGACGAGGCGACACT-CATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGT 342 consensus_6211#1 CGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACT---ACATCCGCGTGTGTGCGAA 343 ** **** * * ***** * ** * * * * * consensus_6211#0 ACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAA 402 consensus_6211#1 ACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTA 403 ** * * ** * * * * * * ** ***** * **** * consensus_6211#0 CGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACG 462 consensus_6211#1 GGATCCA--TATAAGGACCGGG-GCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANC 460 * ** * * * * *** * *** * * * * * * consensus_6211#0 GCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGC 522 consensus_6211#1 ACGTCATCNG-GTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTG- 518 ** * * * * * * * * * ** * * * ** * * * ** consensus_6211#0 AGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGA 582 consensus_6211#1 --GNTTANGTGTNCGCCNCCNG-GCAGGGGAAAAAACCGG----GGAGCAAGAAAGCCTG 571 * * **** * ** ** ** * *** * * * **** consensus_6211#0 GCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAA 642 consensus_6211#1 GTNGCCTA-TACCCGGTCGAANAATCGTCTG---GGAGGCGAAA--TTATGGCAAGA-AA 624 * ** * *** * **** * * ** ** * ** ** * **** ** consensus_6211#0 CAGCTCGTACGTGGAGGGGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGG 702 consensus_6211#1 CCGCCCA-ANGAAGNTTANCCAAAGC----TGCTGCCGAAACGCCT-------------- 665 * ** * * * * * **** * *** ** * consensus_6211#0 GCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGC 762 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 GAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAA 822 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 CCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATAT 882 consensus_6211#1 ------------------------------------------------------------ consensus_6211#0 ACCTA 887 consensus_6211#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||