These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence [CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGATATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAAATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATAATAAGAATAACAATAATAATAACAGTAATAATAATAATAATAATAAGGCAATAAGGTTGTGTTACATAGTTATTAAAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGATGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATTAATAGCGAT] [+] EMBL BM611126 [CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGATATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAAATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATAATAAGAATAACAATAATAATAACAGTAATAATAATAATAATAATAAGGCAATAAGGTTGTGTTACATAGTTATTAAAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCA ] [+] EMBL BM635975 [ ccgGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCACTGTCTCCGGGGCTGCACGATTGTTTTGGTAAGCACGACATGTGTTTGGTTTCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGATGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATTAATAGCGAT] consensusID : consensus_6215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence [GGATTAATATAAGGCAATAAGGTTGTGTTACATAGTTATTANAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCAGGACGGAACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACGACATGTGTTGGTTTCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTGAATGTNTGTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGGTGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATTTTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAACTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC] [+] EMBL AL694278 [GGATTAATATAAGGCAATAAGGTTGTGTTACATAGTTATTANAAGAGGCAACATTACACTATACTTCAGACAAGCGAGTTATATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCGGGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCCCAATATTTGAACAACATTAGTATAGTTTGAATTGCACGCCTGTTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGTGTACTGTTCGCGGGCGTGTTTCATTTAACCATACAAACTAGAAGCCAACCAGGACGGAACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACGACATGTGTTGGTTTCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATTGAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCAACGCCAATTGGCTGTGAATGTNTGTTCTTTTCTCATCAGTCTTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATG ] [-] EMBL BX627648 [ TTTTTCAATCGTGCGTAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAAATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGTTATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGAACAGGTGTGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGGTTGATTTTTAAACAAGCCCCGGAAAAAGGGTGACAAACATGCAAAAGAAGCATACAAAACAAACGCTCATACACCGGCAGATATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATTTTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAACTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC] consensusID : consensus_6215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [CCGCGGTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACACACACTACTAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTCGAAAACAATCGAAACGTGTGCTATGGTAGAGCTTGAATCGCCTTAATAACATACAGGGCTAGTTAATGTGCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGGGCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCCCTCCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCAGTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAACCCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAAAAGCAGCCATCTTACGTACTTATCCCACCGTTTGCCAACCACCCGTTGGTTGGCAAAAATGTTTNAAAACCACCAAACCCTTCGGATTATACCGGTATNCCCCGCACACACGCAACNTCATTGGTAACTACACAAGGCACCCCGGCTCCACACGCCTTCGGGGTCACANAGGGCGTNTCACCNCCNTCTCGGGCCCCTCTACACACCTTCAACACCCCGNNCGTTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAGCATTACACTCTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGCTTATGTANAAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACCCCTTCCCCGCGA] [+] EMBL AL693003 [CCGCGGTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACACACACTACTAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTCGAAAACAATCGAAACGTGTGCTATGGTAGAGCTTGAATCGCCTTAATAACATACAGGGCTAGTTAATGTGCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGGGCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCCCTCCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCAGTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAACCCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAAAAGCAGCCATCTTACGTACTTATCCCACCGTTTGCCAACCACCCGTTGGTTGGCAAAAATGTTTNAAAACCACCAAACCCTTCGGATTATACCGGTATNCCCCGCACACACGCAACNTCATTGGTAACTACACAAGGCACCCCGGCTCCACACGCCTTCGGGGTCACANAGGGCGTNTCACCNCCNTCTCGGGCCCCTCTACACACCTTCAACACCCCGNNCGTTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAGCATTACACTCTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGCTTATGTANAAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACCCCTTCCCCGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6215#0 CCGCGTTGTCACGCATTTCATTTTACACATATCCACACGTTCAAAGTATTGAGACACCGA 60 consensus_6215#1 ------------------------------------------------------------ consensus_6215#2 ------------------------------------------------------------ consensus_6215#0 TATTGGTTTATCGAATTTATTAGATCCATTTTTTACTAGACATACTGGATTGCATAGTAA 120 consensus_6215#1 ------------------------------------------------------------ consensus_6215#2 ------------------------------------------------------------ consensus_6215#0 ATTATTTATTTCCCTTTCGCGTTCACACGGAAAACAAAATTATCCTTATTCGAAATAATA 180 consensus_6215#1 ------------------------------------------------------------ consensus_6215#2 -------------------------------------------------------CCGCG 5 consensus_6215#0 ATAAGAATAACAAT-AATAATAACAGTAATAATAATAATAATAA-TAAGGCAATAAGGTT 238 consensus_6215#1 ----------------------------------GGATTAATA--TAAGGCAATAAGGTT 24 consensus_6215#2 GTTATTTTACTGTTCGAGATTTACCCTATTTACGAAACTCNTGGGTAAGGTAGAGAACAC 65 * * * ***** * * consensus_6215#0 GTGTTACATAGTTATTAAAAGAGGCAACATTA-CACTATACTTCAGACAAGC-GAGTTAT 296 consensus_6215#1 GTGTTACATAGTTATTANAAGAGGCAACATTA-CACTATACTTCAGACAAGC-GAGTTAT 82 consensus_6215#2 ACACTAC-----TAATACCGCGGGGTACGTTAGTACCGCGCTAAACACAACCCGAAACTC 120 *** ** ** ** ** *** ** ** * **** * ** consensus_6215#0 ATTAACATTACGACTATATAAACCTATTGCATTAGTAGAGTCCCTGCCGGGTCCCACCCG 356 consensus_6215#1 ATTAACATTACGACTATATAAACCTATTGGATTAGTAGAGTCCCTGCCGGGTCCCACCCG 142 consensus_6215#2 GAAAACAATCGAAACGTGTG---CTATGGTAGAGCTTGAATCGCCTTAATAACATACAGG 177 **** * * * * **** * * * ** ** * * ** * consensus_6215#0 GGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCC-CAATATT-TGAACAACATTAGT 414 consensus_6215#1 GGCAAAGGGTGTTAGCATAGTTTGTTCGGTTCTTGCC-CAATATT-TGAACAACATTAGT 200 consensus_6215#2 GCTAGTTAATGT--GCAGGTCGTCTTAGATTTTAGCCATAGCACCCTGGACGCTATGNGG 235 * * *** *** * ** * ** * *** * * ** ** ** * consensus_6215#0 ATAGTTTGAATTGCACGCCTG------TTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGT 468 consensus_6215#1 ATAGTTTGAATTGCACGCCTG------TTCCAAAGCTCTGTTTGAGTGGAGCAGGATCGT 254 consensus_6215#2 GCGTGTANNCATTCATGCTTACGAAAATCACCAATCGCTCATTAACACTNGTAAAACCCC 295 * * ** ** * * * ** * ** ** * * * * * consensus_6215#0 GTACTGTTCGCGGGCGTGTTTCATTTA-ACCATACAA-ACTAGAAGCCAACCA------- 519 consensus_6215#1 GTACTGTTCGCGGGCGTGTTTCATTTA-ACCATACAA-ACTAGAAGCCAACCAGGACGGA 312 consensus_6215#2 CT-CCCTTCACAGACGAACATATTCTAGACCGGGTGTTAATTGAGGCCGTATATCA---- 350 * * *** * * ** * * ** *** * * ** *** * consensus_6215#0 ----CTGTCTCCGGGGCTGCACGATTGTTTTGG-TAAGCACG----ACATGTGTTTGGTT 570 consensus_6215#1 ACCACTGTCTCCGGGGCTGCACGATTGTTTNNGGTAAGCACG----ACATGTGTT-GGTT 367 consensus_6215#2 ---GTTATCTACGGTAATAGACTATACCTNTATATAGGCATTTGGTACATAGGTTACAAC 407 * *** *** * ** ** * ** *** **** *** consensus_6215#0 TCTATTGGTAAAATACTGATTTCGGACAGTTTTTACCCTATCGATAATTGTGGCTAAATT 630 consensus_6215#1 TCTATTGGTAAAATACTGAATTTGGATAGTTTTTACCCTATCGATAATTGTTGCTAAATT 427 consensus_6215#2 CCCCTATATAATCTACCCCGCGACGGCCATACTGGCTCTTAAANAAAANACTACCGAA-- 465 * * *** *** * * * * ** ** * ** consensus_6215#0 GAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCA 690 consensus_6215#1 GAGTAACGCCTCTCCCTCTCTGTCCTGACCATGTTCGGTCACAATCGGTACGTTTGTCCA 487 consensus_6215#2 AAGCAGCCATCTTACGTACTTATCCCACC---GTTTGCCAACCACCCGTTGGTTGGCAAA 522 ** * * * * * * *** * *** * ** * * ** *** * * consensus_6215#0 A-CGCCAATTGGCTGTTGAATGTTTGTTTTCTTTTCTCATCAGTCTTTTTCAATCGTGCG 749 consensus_6215#1 A-CGCCAATTGGCTGT-GAATGTNTGTT--CTTTTCTCATCAGTCTTTTTCAATCGTGCG 543 consensus_6215#2 AATGTTTNAAAACCACCAAACCCTT-----CGGATTATACCGGTATNCCCCGCACACACG 577 * * * ** * * * * * ** * * * ** consensus_6215#0 TAATCTAAACCTAGCCGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAA 809 consensus_6215#1 TAATCTAAACCTAGCTGAAAAGCGAAGGTGCAGCATTGTCCTACCTATATACACGAGCAA 603 consensus_6215#2 CAACNT---CATTGGTAACTACACAAGGCAC--------CCCGGCTCCACACGCCTTCGG 626 ** * * * * * * **** * ** ** * ** * * consensus_6215#0 ATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGT 869 consensus_6215#1 ATGCAAATAGTATGATAAACTAGTAGCTATAGATAGACACGTTTGTTTTTTTTTTAGCGT 663 consensus_6215#2 GGTCACANAGGGCGTNTCACCNCCNTCT-----CGGGCCCCTCTACACACCTTC-AACAC 680 ** * ** * ** ** * * * * * ** * * consensus_6215#0 TATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACGGAACAGGT--G 927 consensus_6215#1 TATTAGCAACTAACAAACAGTTGCGGGGTGGAAACAAGTGTTGCGAACG-AACAGGT--G 720 consensus_6215#2 CCCGNNCG--TTACACACCGACCTCCCCCCCACACAACATCCCCAAAAGAACCGGTTTAG 738 * * *** ** * * **** * ** * * * * * * consensus_6215#0 TGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGG-TTGATTTTTAAACAAGCCCCGGAA 986 consensus_6215#1 TGTTACATTGCACAGGTGTGCAAGTGAAGAGAGGG-TTGATTTTTAAACAAGCCCCGGAA 779 consensus_6215#2 CATTACACT-CTCAGTTCTCTGAACATTNAGNCNCCTTAACCCCTAAGC---TTATGTAN 794 ***** * * *** * * * ** ** * *** * * * consensus_6215#0 AAAGGATGACAAACATGCAAAAGA-AGCATACAAAACAAACGCTCATACACCGGCAGATT 1045 consensus_6215#1 AAAGGGTGACAAACATGCAAAAGA-AGCATACAAAACAAACGCTCATACACCGGCAGAT- 837 consensus_6215#2 AAACTTTCCCCAGTTTAAACCCGTCACCATCTCTCGCAGGCCCNCNCTCTCCCANGGACC 854 *** * * * * * * * *** ** * * * * ** ** consensus_6215#0 -AATAGCGAT-------------------------------------------------- 1054 consensus_6215#1 -ATTCGCTGTGAGGAGGGGGTTACAGTTTAATAGCGATTGTGATTTTCGTAATCATAATT 896 consensus_6215#2 CCTTCCCCGCGA------------------------------------------------ 866 * * consensus_6215#0 ------------------------------------------------------------ consensus_6215#1 TTACACGCCCCATAGCGTCCAGGGTGCTATGGCTAAAATCTAAGACGACCTGCACATTAA 956 consensus_6215#2 ------------------------------------------------------------ consensus_6215#0 ------------------------------------------ consensus_6215#1 CTAGCCCTGTATGTTATTAAGGCGATTCAAGCTCTACCAAGC 998 consensus_6215#2 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||