cluster # 6216

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Anopheles gambiae
cluster # 6216 cluster # 6216 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6216#0 length = 1203 sequences # 4

consensus_6216#1 length = 77 sequences # 1

consensusID : consensus_6216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1203
fasta sequence

                              [CGGAATGCAGCAGCACCAGTGACACCGAGAACGACACTGAGAATGGCGACAACGAAGTAGTACCGCCACACTGTCACATCACGCTGAAGTGCACCCGGGAGATTGCCGGCTTCAACGGGCTCGGGGAGGCGGTCCGGCGGCTCGATTTCCGCAGCTCGGTACGGGACGGCCGTCGGTTTAACTACGTCTGTGCGCTGCTGCGGCTGCTCGTGTCCGGCAAGGGCATCACCAGCCTTCCGGGCTGTGCCCAGCGGCTGCTGCTCCAGATGCTGGAGGAGGTGGCGACGTACGTGAGCGACTCGCAGCAGAACATTAACGTGCTGCGGGGGCTGGTGCAGCAGCTGCGCGCGCTGCTGAACCAGGAGAACCAAAAGTGCTGGGGCAAACCGCTCGGCAGCCAGAGCCTGTGGGCCGAGCACGTGCAAACCATCCAGCGCATACAGGATATAGCTAGTCAGATTGAAATTAAGGAGCCCGGTCCAAACATTCGTCCAAAACTACACGACCTGCCCGAGGAGTGTGTGCGCGAGATCATACTCCGAATCACCGACTACAAGGATCTGGAAGCGTCGGCCTCCGCCTGGTCGCTGATGGCCGCCCTCATCTCCGAGCAGCGGGTGTGGCGCGAGCTGTCCCACTACCACTTCACCAAGCAGCAGATCGATGTGGTGCTGGAGAAGATGTGTCTGCAGGATACGAAGGAGCGGCACCGCAACTGGCAGGCGATCTACCACGCCTTGCGCAAGATGTACGGTGTGCGGGAGGAGCTTCAGTATGCAGAAATTCTAGCGTTCTGTCGGCTTTGTCGCTGCCTGTTCTGGCCATCCGCTGGTCATCCGTGCATCGTCGACCAGTGTCCCGATTTTCGGCAGCGCGTCCAGGAGGCGGGCAACAGTAATAGCAACGAAACACAGCCCGGGCCGCCGGCAAAGTTTCTGCAGTACTTTTCGCTGTAAGCGAGGGAGGAGCAGAGCCTCTCATGCGCTGTTGTTGTACTTCCATTGCTGGCAATGATCACGGGCGAAAGCAAAACGTTTGAAGAATCTGGGGCGCGGACGCCAGCCAAGGACACGAGAAGGATCGATACCGAATAGCCATAGCCACTCTATCTTCACTCAACTACATATATATATTTATATTTTTCTAAACTAAACAGAGAACCAACAAGACAAGCCGAGCAGTGTGGGTAATTTTTGTGTTCAA]

[+] EMBL BX624581             [CGGAATGCAGCAGCACCAGTGACACCGAGAACGACACTGAGAATGGCGACAACGAAGTAGTACCGCCACACTGTCACATCACGCTGAAGTGCACCCGGGAGATTGCCGGCTTCAACGGGCTCGGGGAGGCGGTCCGGCGGCTCGATTTCCGCAGCTCGGTACGGGACGGCCGTCGGTTTAACTACGTCTGTGCGCTGCTGCGGCTGCTCGTGTCCGGCAAGGGCATCACCAGCCTTCCGGGCTGTGCCCAGCGGCTGCTGCTCCAGATGCTGGAGGAGGTGGCGACGTACGTGAGCGACTCGCAGCAGAACATTAACGTGCTGCGGGGGCTGGTGCAGCAGCTGCGCGCGCTGCTGAACCAGGAGAACCAAAAGTGCTGGGGCAAACCGCTCGGCAGCCAGAGCCTGTGGGCCGAGCACGTGCAAACCATCCAGCGCATACAGGATATAGCTAGTCAGATTGAAATTAAGGAGCCCGGTCCAAACATTCGTCCAAAACTACACGACCTGCCCGAGGAGTGTGTGCGCGAGATCATACTCCGAATCACCGACTACAAGGATCTGGAAGCGTCGGCCTCCGCCTGGTCGCTGATGGCCGCCCTCATCTCCGAGCAGCGGGTGTGGCGCGAGCTGTCCCACTACCACTTCACCAAGCAGCAGATCGATGTGGTGCTGGAGAAGATGTGTCTGCAGGATACGAAGGAGCGGCACCGCAACTGGCAGGCGATCTACCACGCCTTGCGCAAGATGTACGGTGTGCGGGANGAGCTTCAGTATGCAGAAATTCTA                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM653276             [                                                                                                                                                                                        ccgCTGTGCGCTGCTGCGGCTGCTCGTGTCCGGCAAGGGCATCACCAGCCTTCCGGGCGGTGCCCAGCGGCTGCTGCTCCAGATGCTGGAGGAGGTGGCGACGTACGTGAGCGACTCGCAGCAGAACATTAACGTGCTGCGGGGGCTGGTGCAGCAGCTGCGCGCGCTGCTGAACCAGGAGAACCAAAAGTGCTGGGGCAAACCGCTCGGCAGCCAGAGCCTGTGGGCCGAGCACGTGCAAACCATCCAGCGCATACAGGATATAGCTAGTCAGATTGAAATTAAGGAGCCCGGTCCAAACATTCGTCCAAAACTACACGACCTGCCCGAGGAGTGTGTGCGCGAGATCATACTCCGAATCACCGACTACAAGGATCTGGAAGCGTCGGCCTCCGCCTGGTCGCTGATGGCCGCCCTCATCTCCGAGCAGCGGGTGTGGCGCGAGCTGTCCCACTACCACTTCACCAAGCAGCAGATCGATGTGGTGCTGGAGAAGATGTGTCTGCAGGATACGAAGGAGCGGCACCGCAACTGGCAGGCGATCTACCACGCCTTGCGCAAGATGTACGGTGTGCGGGAGGAGCTTCAGTATGCAGAAATTCTAGCGTTCTGTCGGCTTTGTCGCTGCCTGTTCTGGCCATCCGCTGGTCATCCGTGCATCGTCGACCAGTGT                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX618723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGGAGCTTCAGTATGCAGAAATTCTAGCGTTCTGTCGGCTTTGTCGCTGCCGGTTCTGGCCATCCGCTGGTCATCCGTGCATCGTCGACCAGGGTCCCGATTTTCGGCAGCGCGTCCAGGAGGCGGGCAACAGTAATAGCAACGAAACACAGCCCGGGCCGCCGGCAAAGTTTCTGCAGTACTTTTCGCTGTAAGCGAGGGAGGAGCAGAGCCTCTCATGCGCTGTTGTTGTACTTCCATTGCTGGCAATGATCACGGGCGAAAGCAAAACGTTTGAAGAATCTGGGGCGCGGACGCCAGCCAAGGACACGAGAAGGATCGATACCGAATAGCCATAGCCACTCTATCTTCACTCAAC                                                                                   ]
[+] EMBL BX614991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGTACTTTTCGTTGTAAGCGAGTGAGGAGCAGAGCCTCTCATGCGCTGTTGTTGTACTTCCATTGCTGGCAATGATCACGGGCGATAGCAAAACGTTTGAAGAATCTGGTGCGCGGACGCCAGCCAAGGACACGAGAAGGATCGATACCGAATAGCCACAGCCACTCTATCTTCACTCAACTACATATATATATTTATATTTTTCTAAACTAAACAGAGAACCAACAAGACAAGCCGAGCAGTGTGGGTAATTTTTGTGTTCAA]




>consensus_6216#0
CGGAATGCAGCAGCACCAGTGACACCGAGAACGACACTGAGAATGGCGACAACGAAGTAG
TACCGCCACACTGTCACATCACGCTGAAGTGCACCCGGGAGATTGCCGGCTTCAACGGGC
TCGGGGAGGCGGTCCGGCGGCTCGATTTCCGCAGCTCGGTACGGGACGGCCGTCGGTTTA
ACTACGTCTGTGCGCTGCTGCGGCTGCTCGTGTCCGGCAAGGGCATCACCAGCCTTCCGG
GCTGTGCCCAGCGGCTGCTGCTCCAGATGCTGGAGGAGGTGGCGACGTACGTGAGCGACT
CGCAGCAGAACATTAACGTGCTGCGGGGGCTGGTGCAGCAGCTGCGCGCGCTGCTGAACC
AGGAGAACCAAAAGTGCTGGGGCAAACCGCTCGGCAGCCAGAGCCTGTGGGCCGAGCACG
TGCAAACCATCCAGCGCATACAGGATATAGCTAGTCAGATTGAAATTAAGGAGCCCGGTC
CAAACATTCGTCCAAAACTACACGACCTGCCCGAGGAGTGTGTGCGCGAGATCATACTCC
GAATCACCGACTACAAGGATCTGGAAGCGTCGGCCTCCGCCTGGTCGCTGATGGCCGCCC
TCATCTCCGAGCAGCGGGTGTGGCGCGAGCTGTCCCACTACCACTTCACCAAGCAGCAGA
TCGATGTGGTGCTGGAGAAGATGTGTCTGCAGGATACGAAGGAGCGGCACCGCAACTGGC
AGGCGATCTACCACGCCTTGCGCAAGATGTACGGTGTGCGGGAGGAGCTTCAGTATGCAG
AAATTCTAGCGTTCTGTCGGCTTTGTCGCTGCCTGTTCTGGCCATCCGCTGGTCATCCGT
GCATCGTCGACCAGTGTCCCGATTTTCGGCAGCGCGTCCAGGAGGCGGGCAACAGTAATA
GCAACGAAACACAGCCCGGGCCGCCGGCAAAGTTTCTGCAGTACTTTTCGCTGTAAGCGA
GGGAGGAGCAGAGCCTCTCATGCGCTGTTGTTGTACTTCCATTGCTGGCAATGATCACGG
GCGAAAGCAAAACGTTTGAAGAATCTGGGGCGCGGACGCCAGCCAAGGACACGAGAAGGA
TCGATACCGAATAGCCATAGCCACTCTATCTTCACTCAACTACATATATATATTTATATT
TTTCTAAACTAAACAGAGAACCAACAAGACAAGCCGAGCAGTGTGGGTAATTTTTGTGTT
CAA

consensusID : consensus_6216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 77
fasta sequence

                              [TCGCACACTGTACATACGCTGAATGTGCACCGGGAGATTGCCTGGCTTCAACGGGCTCGTGGGAGGCGGTCCGGCGG]

[+] EMBL AL933099             [TCGCACACTGTACATACGCTGAATGTGCACCGGGAGATTGCCTGGCTTCAACGGGCTCGTGGGAGGCGGTCCGGCGG]




>consensus_6216#1
TCGCACACTGTACATACGCTGAATGTGCACCGGGAGATTGCCTGGCTTCAACGGGCTCGT
GGGAGGCGGTCCGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6216#0      CGGAATGCAGCAGCACCAGTGACACCGAGAACGACACTGAGAATGGCGACAACGAAGTAG 60
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      TACCGCCACACTGTCACATCACGCTGAA-GTGCACCCGGGAGATTGCC-GGCTTCAACGG 118
consensus_6216#1      --TCGC-ACACTGT-ACAT-ACGCTGAATGTGCACC-GGGAGATTGCCTGGCTTCAACGG 54
                         *** ******* **** ******** ******* *********** ***********

consensus_6216#0      GCTCG-GGGAGGCGGTCCGGCGGCTCGATTTCCGCAGCTCGGTACGGGACGGCCGTCGGT 177
consensus_6216#1      GCTCGTGGGAGGCGGTCCGGCGG------------------------------------- 77
                      ***** *****************                                     

consensus_6216#0      TTAACTACGTCTGTGCGCTGCTGCGGCTGCTCGTGTCCGGCAAGGGCATCACCAGCCTTC 237
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGGGCTGTGCCCAGCGGCTGCTGCTCCAGATGCTGGAGGAGGTGGCGACGTACGTGAGCG 297
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      ACTCGCAGCAGAACATTAACGTGCTGCGGGGGCTGGTGCAGCAGCTGCGCGCGCTGCTGA 357
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      ACCAGGAGAACCAAAAGTGCTGGGGCAAACCGCTCGGCAGCCAGAGCCTGTGGGCCGAGC 417
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      ACGTGCAAACCATCCAGCGCATACAGGATATAGCTAGTCAGATTGAAATTAAGGAGCCCG 477
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GTCCAAACATTCGTCCAAAACTACACGACCTGCCCGAGGAGTGTGTGCGCGAGATCATAC 537
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      TCCGAATCACCGACTACAAGGATCTGGAAGCGTCGGCCTCCGCCTGGTCGCTGATGGCCG 597
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CCCTCATCTCCGAGCAGCGGGTGTGGCGCGAGCTGTCCCACTACCACTTCACCAAGCAGC 657
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      AGATCGATGTGGTGCTGGAGAAGATGTGTCTGCAGGATACGAAGGAGCGGCACCGCAACT 717
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GGCAGGCGATCTACCACGCCTTGCGCAAGATGTACGGTGTGCGGGAGGAGCTTCAGTATG 777
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CAGAAATTCTAGCGTTCTGTCGGCTTTGTCGCTGCCTGTTCTGGCCATCCGCTGGTCATC 837
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGTGCATCGTCGACCAGTGTCCCGATTTTCGGCAGCGCGTCCAGGAGGCGGGCAACAGTA 897
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      ATAGCAACGAAACACAGCCCGGGCCGCCGGCAAAGTTTCTGCAGTACTTTTCGCTGTAAG 957
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGAGGGAGGAGCAGAGCCTCTCATGCGCTGTTGTTGTACTTCCATTGCTGGCAATGATCA 1017
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      CGGGCGAAAGCAAAACGTTTGAAGAATCTGGGGCGCGGACGCCAGCCAAGGACACGAGAA 1077
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GGATCGATACCGAATAGCCATAGCCACTCTATCTTCACTCAACTACATATATATATTTAT 1137
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      ATTTTTCTAAACTAAACAGAGAACCAACAAGACAAGCCGAGCAGTGTGGGTAATTTTTGT 1197
consensus_6216#1      ------------------------------------------------------------
                                                                                  

consensus_6216#0      GTTCAA 1203
consensus_6216#1      ------