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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 734 fasta sequence
[TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA-TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA-TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC]
[+] EMBL BX611600 [TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAAT ]
[+] EMBL AGA280175 [ tttttttTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCAGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGNGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACT ]
[-] EMBL BX468823 [ GTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACACTTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAACTTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATCAAATGCAATTTAGGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC]
consensusID : consensus_6217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG]
[-] EMBL BM613026 [TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG]
[-] EMBL AGA281875 [ GTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCatt]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6217#0 TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATC 60
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 AAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTT 120
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 GTAACCGCGTGATCCCCCGGGGGCTTCACATTCAATCTTAATGAATTTGTTTTGCACAAA 180
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CGTGCAGAACCTAAACATGAAATTCAATAGCATCACAATTAATTCAATTCTAGCTACTAG 240
consensus_6217#1 ------------------------------------------------------------
consensus_6217#0 CGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAAT 300
consensus_6217#1 -----------------------------------------------------------T 1
*
consensus_6217#0 AATTCAAGAAACACATGCCGG-ATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 359
consensus_6217#1 AATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 61
********************* **************************************
consensus_6217#0 CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 419
consensus_6217#1 CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 121
************************************************************
consensus_6217#0 AAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 479
consensus_6217#1 AAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 181
*************** ********************************************
consensus_6217#0 CGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTT 539
consensus_6217#1 CGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTT 241
**** ************************************* *****************
consensus_6217#0 CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 599
consensus_6217#1 CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 301
************************************************************
consensus_6217#0 TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 659
consensus_6217#1 TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 361
************************************************************
consensus_6217#0 CCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTT-AGCCGAAATGC-- 716
consensus_6217#1 CCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGT 421
***** *************** ************************ **********
consensus_6217#0 --CATCGTGCCGGATTCTGC---------------------------------------- 734
consensus_6217#1 CGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGC 481
** * **** * *
consensus_6217#0 ------------------------------------------------------------
consensus_6217#1 TGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACT 541
consensus_6217#0 ------------------------------------------------------------
consensus_6217#1 GCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGG 601
consensus_6217#0 ------------------------------------------------------------
consensus_6217#1 AGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCG 661
consensus_6217#0 -------------------
consensus_6217#1 TCGATATAGTACTGCCCGG 680
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||