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Anopheles gambiae
cluster # 6217 cluster # 6217       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6217#0 length = 734 sequences # 3  
consensus_6217#1 length = 680 sequences # 2  

consensusID : consensus_6217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 734
fasta sequence
                              [TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA-TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA-TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC]

[+] EMBL BX611600             [TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AGA280175            [          tttttttTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATCAAAACTGAACACGGCTGCAGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTTGTAACCGCGTGATCCCCCGGNGGCTTCACA TTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAA TTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACT                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BX468823             [                                                                                                               GTGAAACTTGTAACCGCGTGATCCCCCGGGGGCTTCACACTTCAATCTTAATGAATTTGTTTTGCACAAACGTGCAGAACCTAAACATGAAATTCAATAGCATCACAACTTAATTCAATTCTAGCTACTAGCGGCCGTGTTAAACACAGAGAAATCAAATGCAATTTAGGCATTGCAAAGAAAAGCAAAATAATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATCGTGCCGGATTCTGC]


>consensus_6217#0 TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATC AAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTT GTAACCGCGTGATCCCCCGGGGGCTTCACATTCAATCTTAATGAATTTGTTTTGCACAAA CGTGCAGAACCTAAACATGAAATTCAATAGCATCACAATTAATTCAATTCTAGCTACTAG CGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAAT AATTCAAGAAACACATGCCGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTC CCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGA AAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTC GCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTTC ACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTT CAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGAC CTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTTAGCCGAAATGCCATC GTGCCGGATTCTGC



consensusID : consensus_6217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence
                              [TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG]

[-] EMBL BM613026             [TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGTCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGGAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTTCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTTCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCTTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGTCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGCTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCCGG]
[-] EMBL AGA281875            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACTGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGGAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCGTCGATATAGTACTGCCatt]


>consensus_6217#1 TAATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAG TCCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAG GAAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGT TCGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTT TCACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCC TTCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCG ACCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTG TCGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAG CTGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAAC TGCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTG GAGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGC GTCGATATAGTACTGCCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6217#0      TAGTAGAATTCAAATCGTAAGATAATTCATTTTATTTCAACTATAGAAAATCAACCTATC 60
consensus_6217#1      ------------------------------------------------------------
                                                                                  

consensus_6217#0      AAAACTGAACACGGCTGCCGAAAAAGGAAACAAACGATAAAATGAAATGTTGTGAAACTT 120
consensus_6217#1      ------------------------------------------------------------
                                                                                  

consensus_6217#0      GTAACCGCGTGATCCCCCGGGGGCTTCACATTCAATCTTAATGAATTTGTTTTGCACAAA 180
consensus_6217#1      ------------------------------------------------------------
                                                                                  

consensus_6217#0      CGTGCAGAACCTAAACATGAAATTCAATAGCATCACAATTAATTCAATTCTAGCTACTAG 240
consensus_6217#1      ------------------------------------------------------------
                                                                                  

consensus_6217#0      CGGCCGTGTTAAACACAGAGAAATAAAATGCAATTTAAGCATTGCAAAGAAAAGCAAAAT 300
consensus_6217#1      -----------------------------------------------------------T 1
                                                                                 *

consensus_6217#0      AATTCAAGAAACACATGCCGG-ATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 359
consensus_6217#1      AATTCAAGAAACACATGCCGGGATTATACTACACGTCATTCGGTGCGCTGAAGAGATAGT 61
                      ********************* **************************************

consensus_6217#0      CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 419
consensus_6217#1      CCCACGGGAAGATCGTGAGAGACCTCGCGCAAAGAATACGCTGTCGTTTGTGTGACTAGG 121
                      ************************************************************

consensus_6217#0      AAAAACGATTACTGTTGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 479
consensus_6217#1      AAAAACGATTACTGTGGCTCGCGATCGGGTGTTGCCGCTGGTGCCCTGGCCAATGCCGTT 181
                      *************** ********************************************

consensus_6217#0      CGCGACAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGGAATTCGGGCTTCCTTTT 539
consensus_6217#1      CGCGGCAGTCGGTCGTACAGTAGGACGTATTCCAGCAGCACGCAATTCGGGCTTCCTTTT 241
                      **** ************************************* *****************

consensus_6217#0      CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 599
consensus_6217#1      CACACACCACGCACCATTGCCTTTTCTTAATTTCACTTATTTGGTGCTGGTGCGTTTCCT 301
                      ************************************************************

consensus_6217#0      TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 659
consensus_6217#1      TCAACCATTCCAGTTTGCGGGCAAAGTGCTGCTCTTTGTTCTGCAGCAGCTTTAGAGCGA 361
                      ************************************************************

consensus_6217#0      CCTGTATCGTTTCCTCCAGATTGGTTACTTGTTGAAACAGTTGCTT-AGCCGAAATGC-- 716
consensus_6217#1      CCTGTTTCGTTTCCTCCAGATCGGTTACTTGTTGAAACAGTTGCTTTAGCCGAAATGTGT 421
                      ***** *************** ************************ **********   

consensus_6217#0      --CATCGTGCCGGATTCTGC---------------------------------------- 734
consensus_6217#1      CGTATTTTTCCGGGAACCGTAGAATTTCATTCTGCTTCGTGCGAGCTACTCGCGTAGAGC 481
                         **  * ****   * *                                         

consensus_6217#0      ------------------------------------------------------------
consensus_6217#1      TGGAAGCGCCTACCTCACCATCGTACCCGTTATGATTGCCATCGAGCGCGCAGTCCAACT 541
                                                                                  

consensus_6217#0      ------------------------------------------------------------
consensus_6217#1      GCTGTAGAGGAAGCTCGACCGAATCCTGCTCGGGCGATTGGGCGACTGCTTGAGTGCTGG 601
                                                                                  

consensus_6217#0      ------------------------------------------------------------
consensus_6217#1      AGCGTGTCTTTTTGGCTGGTGTATGCTGATGGGAGGCCGTTTCCCGACGTTTTGACCGCG 661
                                                                                  

consensus_6217#0      -------------------
consensus_6217#1      TCGATATAGTACTGCCCGG 680
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)