These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 929 fasta sequence [CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTTCTCCTCCGTGCAAGGGCATCGGCCTAATCGGTCGTTCCTATTGCCTTTATTCATTTGGAGGGGGTAAGGGGAAGGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGGGCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAGAGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACCGCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAGCGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTAGTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAACATAACGATGCGACAG] [+] EMBL BM616931 [CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTTCTCCTCCGTGCAAGGGCATCGGCCTAATCGGTCGTTCCTATTGCCTTTATTCATTTGGAGGGGGTAAGGGGAAGGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTT ] [+] EMBL BM595014 [ ccGGGTTAATTTGTCGTTCTGAGTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGAACCCGTTTTGTTGCTTTATGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGGGCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAGAGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACCGCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAGCGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTAGTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAACATAACGATGCGACAG] [+] EMBL BM648276 [ ccgAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTTGCAAATGGTTTCCTTTGTTACGATCGGTGTTACATGATTGAGATTGAGACAATGAAGGTTTAAAATAGAACGCGAGGCAATCGAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTCGATAAATTATAC ] consensusID : consensus_6223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence [TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGATGCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAACAATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTCCTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGTCGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGATCGGCTGTTTACATGATTGANGCACTNNGCACGACANACTNGCACACGCTCCNNCCCACTAGAACGCGAGGCCAATC] [+] EMBL AL932976 [TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGATGCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAACAATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTATTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAATGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTCCTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGTCGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTTGTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACAGAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGATCGGCTGTTTACATGATTGANGCACTNNGCACGACANACTNGCACACGCTCCNNCCCACTAGAACGCGAGGCCAATC] [+] EMBL BM583237 [ ccgGGACGAGCCGCGGAAAAGATTGCTGACCGTCGGGCAGGATCGTATCATCAAGATTTGGGACCTTTCCTCGATCTGGGGTTAGTAGTGGCGATTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTTTAACGAAGGACCACGTCGCGGAA AATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAACCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCAT TTATTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6223#0 ------------------------------------------------------------ consensus_6223#1 TCCCCGAGGTTAACAGCGGCTGAAGAGCGAAGAGCGACCTCGCTGGCCACGTTCCACGAT 60 consensus_6223#0 ------------------------------------------------------------ consensus_6223#1 GCGAAGCACAGTATCGTCGGGATGGATTTGGACGAGCCGCGGAAAAGATTGCTGACCGTC 120 consensus_6223#0 ------------------------------------------------------------ consensus_6223#1 GGGCAGGACCGTATTATCAAGATTTGGGACCTCTCCTCGATCTGGGGTTAGTAGTGGCGA 180 consensus_6223#0 ------------------------------------------------------------ consensus_6223#1 TTGGCGGGCGAAAACACGCGCGGCTCCGGTAACGTCTAACGAAGGACCACGCCGCGGAAC 240 consensus_6223#0 -------------------CCGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAA 41 consensus_6223#1 AATTCAAAACAACGGCAAAAAGGCGCCACTAGCAGCGCAGTGGGTTCGTCGGTGGCGGAA 300 *************************************** consensus_6223#0 CCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCAT-TTA 100 consensus_6223#1 CCGAAATGATGCATTTTACGGCGGCGATACAGCAGCGTACGTAATATGAGCGTCATCTTA 360 ******************************************************** *** consensus_6223#0 TTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAA 160 consensus_6223#1 TTTATTACTATTTTCCTTCAAATTTCCCTCCTGTCCTCCCAGAACTGTTATGTAGTCCAA 420 ************************************************************ consensus_6223#0 TGTTAGTCTATCCTTT-TCTCCTCCG-TGCAAG-GGCATCGG-CCTAATCGGTC--GTTC 214 consensus_6223#1 TGTTAGTCTATCCTTTATCCCCTCCGCTGCAAGAGGCATCGGGCCTAATCGCGCTGGTTC 480 **************** ** ****** ****** ******** ******** * **** consensus_6223#0 CTATTGCCTTTAT---TCATTTGGAGGG--GGTAAGGGGAAGGGG-----TTAA-TTTGT 263 consensus_6223#1 CTATTGCCTCTCTATATCATTTGGCAGGCGGGTAAGAAGGCAAGCGCCGCTTAACTTTGT 540 ********* * * ******** ** ****** * * **** ***** consensus_6223#0 CG--TTCTGAG-TTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTT 320 consensus_6223#1 CGATTCCTGAGCTTTAAATGTTACAGTGGCAATATTTCTATTCCTTTATCATACTTCGTT 600 ** * ***** ************************************************ consensus_6223#0 G--AACCCGTTTTGTTGCTTTA-TGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACA 377 consensus_6223#1 GTAAGCCCGTTTCGTTGCTTTAGTGTTGAAGAAAGTAGGTTAAGCTGAGGCAGCGAGACA 660 * * ******* ********* ************************************* consensus_6223#0 GAAAGAGAGAGAGAGAGAGTGAGAAGTTACGTTTGCAAATGGTTTCCTTT--GTTACGAT 435 consensus_6223#1 GAAAGAGAGAGAGAGAGAGTGAGAAGGTACGTTGCAAAATGGTTTCCCTTTGGTTACGAT 720 ************************** ****** *********** ** ******** consensus_6223#0 CGGTG--TTACAAGATTGAGATTGAGACAATGAAGGTTTAAAATCGAACGCGAGGCAATC 493 consensus_6223#1 CGGCTGTTTACATGATTGANGCACTNNGCACGA-----CANACTNGCACACGCTCCNNCC 775 *** ***** ****** * ** * * * * ** ** * * consensus_6223#0 GAATAAGCAACTTGACGTTGACCAGGGCCTTTTTCTTCCTTCTATTCATTCCCTTTTTTC 553 consensus_6223#1 CACTAG--AACGCGAGGCCAATC------------------------------------- 796 * ** *** ** * * * consensus_6223#0 GATAAATTATACAAAAAAAACAACAATATAAAGAAAATAAAACCCCCGGGGGCAATGGGG 613 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 GCAGTCCTGTTTAATAAGAAAGCGTGAACCGTGTAAACGACAAGCCATTAGGGACGCGAG 673 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 AGGTGGTACGGGAGGCGTTGCGCGTCTTTGCGACGGACCAAAAACCAACGAATCAAAACC 733 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 GCAGCTAGGGTGTTAACTGGTGGGGGGCTGGATTTCCTTCACCGCGGAAGGATGTACGAG 793 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 CGCCGATAGGTTAGGGGAATGTACGCGCGTGGGCAAATAATGTAAGAAAACAAAGCTCTA 853 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 GTGAAAAAAAAACAAAATTAAACATCGGTATTTGCAAAATTGGAAACGACAAACAACCAA 913 consensus_6223#1 ------------------------------------------------------------ consensus_6223#0 CATAACGATGCGACAG 929 consensus_6223#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||