These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCGCCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGCGTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGAACGCTTCCGTTCCCTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAATAAATGAAGATACCTCAAAACACGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTGCTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAATGAAAAAAAAGCAGCGCAACTAAACGCGCGACAAGATACGAACCCCCCCCTCCCGNCACGAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGATCCGACACCCGCGTAATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTCCCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGGCGAAGAGGTGTTGTTTCGCCGCCACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACGGCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG] [+] EMBL BX467928 [AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCGCCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGCGTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGAACGCTTCCGTTCCCTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAATAAATGAAGATACCTCAAAACACGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTGCTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAATGAAAAAAAAGCAGCGCAACTAAACGCGCGACAAGATACGAACCCCCCCCTCCCGNCACGAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGATCCGACACCCGCGTAATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTCCCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGGCGAAGAGGTGTTGTTTCGCCGCCACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACGGCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG] consensusID : consensus_6228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCGATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGTACTGAGGGGTGCCACGAGAAAGAAACGCTCTAACGAAAGAGGCAAAGAACGCTTCCGTTCCCTTCACCTCTTTATTCTTATTGCGCGCAGAAGGGTAGGCCAAA] [+] EMBL BM611107 [CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCGATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGTACTGAGGGGTGCCACGAGAAAGAAACGCTCTAACGAAAGAGGCAAAGAACGCTTCCGTTCCCTTCACCTCTTTATTCTTATTGCGCGCAGAAGGGTAGGCCAAA] [+] EMBL BM622680 [ GTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATCCTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATACCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGAGCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAGAACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAAGGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGG ACTGAGGGGTGCCACGAGAA ] consensusID : consensus_6228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCGCTTCATGATGTACAGCAGCAATGAGATGGCTTACATCCGGTGTGTTCGGGCCGGTGACAAAACGACACGATCGAGACACCCGCGTAATGACTGAATAACTAACTCAAAACTGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAACTGTGGGCACGTTAGCGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTTCGTGCCGAGTGGCCCGCGTGCCATAAGCACGATGAAAAAGGCTTTTGAATTTGAACCTGTGCACATGGCTACTGCTGTGCTCTCGCGAGGGGCACGGTGGTGGAAGCTCAGAGCAATGCTTGCTTGCTCTGGACTAGTTGATTGTTGTGCGCGCAAAAAAGACTGTCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAAGCCACGCGATCTTTAAACGATCATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCATCATCATCATCGTCACCGCTCAAAAGTAGTTGGTGTAGATTATACACAGATTGATAGCTTCCAGCGGAGTAAGTGTGTGTTATTGGT] [+] EMBL BM652147 [CCGCGCTTCATGATGTACAGCAGCAATGAGATGGCTTACATCCGGTGTGTTCGGGCCGGTGACAAAACGACACGATCGAGACACCCGCGTAATGACTGAATAACTAACTCAAAACTGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAACTGTGGGCACGTTAGCGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTTCGTGCCGAGTGGCCCGCGTGCCATAAGCACGATGAAAAAGGCTTTTGAATTTGAACCTGTGCACATGGCTACTGCTGTGCTCTCGCGAGGGGCACGGTGGTGGAAGCTCAGAGCAATGCTTGCTTGCTCTGGACTAGTTGATTGTTGTGCGCGCAAAAAAGACTGTCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAAGCCACGCGATCTTTAAACGATCATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCATCATCATCATCGTCACCGCTCAAAAGTAGTTGGTGTAGATTATACACAGATTGATAGCTTCCAGCGGAGTAAGTGTGTGTTATTGGT] consensusID : consensus_6228#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CCCTGCTCTAGCAGAATCCCCTGNGGTAAACACAAAGCGCGCGCGAGCTAATGATTGAGGTATTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGACTGAGGGTGCCCACGAGAAAGAAACGCAAACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTATCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAACCCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAGGGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCGATCACAACCGAGACATGGCACACGANTACCGCGGGGA] [+] EMBL AL696521 [CCCTGCTCTAGCAGAATCCCCTGNGGTAAACACAAAGCGCGCGCGAGCTAATGATTGAGGTATTATTAGAGCAGCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCATGAAAGACGCATTTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTAACACTGGAGAAAACCACACTGAGCCACAACAGCCGCGCGTAATTGTCCGGGACTGAGGGTGCCCACGAGAAAGAAACGCAAACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTATCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAACCCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAGGGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCGATCACAACCGAGACATGGCACACGANTACCGCGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6228#1 CCGTACGAAATGATGAACAGTTGCCCAGCAGCAACGCAACAGCAGCAACGCAACCACTCG 60 consensus_6228#3 ------------------------------------------------------------ consensus_6228#0 -----------------------AGGCCAGAATCGGCACGNGGCCAAACGAGACGATGCG 37 consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ATCACGTGTTTCTTTTAGGGCAGTTTATTTGAAAAGTGCGTTTTTTGTTTGTTTGTTATC 120 consensus_6228#3 ------------------------------------------------------------ consensus_6228#0 CCGTCTCAATCGAAAAGGGATAACATTGGAGAAAGCTACACTGAGCCACAGCAGCCGCGC 97 consensus_6228#2 ---CCGCGCTTCATGATGTACAGCAGCAATGAGA-------TGGCTTACATCCG----GT 46 consensus_6228#1 CTTTCTTCACACATTGGAAGAATCGAAAGAGCGAAGATGATCGCGAGGGTCGCAAAAATA 180 consensus_6228#3 ------------------------------------------------------------ consensus_6228#0 GTAATTGTCCTGGACTGAGGGTGCCACGCGAAAGAAACGCTCTAACGAAAGAGGTAAAGA 157 consensus_6228#2 GTGTTCGGGCCGG--TGACAAAACGACACGATCGAGACACCC--GCGTAATGACTGAATA 102 consensus_6228#1 CCCTCCTCCTTCCGTGAGGATCATGTACACCGATCATGGCTAGCGACGAAGCAGGCAAGA 240 consensus_6228#3 ------------------------------------------------------------ consensus_6228#0 ACGCTTCCGTTCC-CTTCACCTCTTTTTGTTTTTTATAGCGCGCAGTAAGGTAGGCCAAA 216 consensus_6228#2 ACTAACTCAAAAC-TGCGCTTGTTGTCCCTTTCCCCCGATGCTACTCTCGACATGCGAAA 161 consensus_6228#1 GCACCGCATACGTAGTATATGCATCATTTCCACGAAATGAGAATGACTTGACGTAGCAAG 300 consensus_6228#3 ---------------------------------------------CCCTGCTCTAGCAGA 15 consensus_6228#0 TAAATGAAGATACCTCAAAACA--CGATGCCACGCGCAACCGGTGCGCGGTTTGAACCTG 274 consensus_6228#2 C---TGTGGGCACGTTAG------CGATATGGCGAAGTGGTGTTGTTTCGCCGCCACTT- 211 * * consensus_6228#1 AACAAACACATCACACACAAACGCGCGCGCGAGCTAATGATTGAAGGTAGTATTAGAGCA 360 consensus_6228#3 ATCCCCTGNGGTAAACACAAA-GCGCGCGCGAGCTAATGATTGA-GGTATTATTAGAGCA 73 consensus_6228#0 -CTTACCGCAAACACCGCGCACAAGCGCGCACTACGAAAACGAAATGAAACTAAACGAAT 333 consensus_6228#2 -CGTGCCGAGTGGCCCGCGTGCCA-TAAGCACGATGAAAAAGGCTTTTGAATTTGAACCT 269 * * ** * * consensus_6228#1 GCAGACGTTGATCGTAGCAGATCAACTGCTAAG-GGGTATGCA-----TGAAAGACGCAT 414 consensus_6228#3 GCAGACGTTGATCGTAGCAGATCAACTGCTAAGTGGGTATGCA-----TGAAAGACGCAT 128 consensus_6228#0 GAAAAAAA-AGCAGCGCAACTAAACGCGCGACA-AGATACGAACCCCCCCCTCCCGNCAC 391 consensus_6228#2 GTGCACAT-GGCTACTGCTGTGCTCTCGCGA-G-GGGCACGG------TGGTGGAAGCTC 320 * * ** * * * * * consensus_6228#1 TTACCAAATGAGACGATGCGCCGTTCACTCGAAAGG--GGTA-ACACTGGAGAAAACCAC 471 consensus_6228#3 TTACCAAATGAGACGATGCGCCGTTCACTCGAAATGTGGGTA-ACACTGGAGAAAACCAC 187 consensus_6228#0 GAATCATCTTGTAAAGCAGGCAATGAGATGGATGTAAGATCGTGTGACAAAACGACACGA 451 consensus_6228#2 AGAGCAATGCTT---GCTTGCTCTGGACTAGTTG-ATTGTTGTGCGCGCAAAAAAGACTG 376 * ** ** * * * * * * consensus_6228#1 ACTGAGCCACAACAGCCGCGCGTAATTGTCCG----GGTACTGAGGG-GTGCCACGAGAA 526 consensus_6228#3 ACTGAGCCACAACAGCCGCGCGTAATTGTCCG----GG-ACTGAGGG-TGCCCACGAGAA 241 consensus_6228#0 TCCGACACCCGCGTA-ATGACTGAATAACTAACTCAAAAGCTGCGCTTGTTGTCCCTGTC 510 consensus_6228#2 TCTTAATCTCGCACGCGTGACTGTATTGTGCGCAACGAAACTGAA---GCCACGCGATCT 433 * * * * * ** *** * consensus_6228#1 AGAAACGCTC-------TAACGAAAGAGGCA-AAGAACGCTTCCGTTCCCTTCAC-CTCT 577 consensus_6228#3 AGAAACGCA---------AACAGAGGCAACAGAANGGCGTTACCGTTCCTTCAGCTCTTA 292 consensus_6228#0 CCAGATGCTACTCTCGACATGCGAAACTATGGGCACGCTAGCGATATGG-CGAAGAGGTG 569 consensus_6228#2 TTAAACGAT--------CATCCAAAGAAACAGGAACGGTTAGGCTTTGTTCTAATGCCCA 485 * * * * * * consensus_6228#1 TTATTCTTATTGCGCGC-------AGAAGGGTAGGCCAAA-------------------- 610 consensus_6228#3 TCACTNCTAATTGGCGCGGCCACANAGNGGGTAGGCCCAAAATAACACTTGCANGATAAC 352 consensus_6228#0 TTGTT-TCGCCGC-CACTTCGTGTTGAGTGGCCCCCGTGCCATAAGCACGATGTAAAACG 627 consensus_6228#2 TCATCATCATCGT-CACCGC-TCAAAAGTAGTTGGTGTAGATTATACACAGATTGA--TA 541 * * * * consensus_6228#1 ------------------------------------------------------------ consensus_6228#3 CCCACNAACCACGGAATTGCCCNACTGGCGCCAAACCCANGTTGGCCGGNTATTGAACAG 412 consensus_6228#0 GCTTTNTGAATTTGAACCGGTGCACATGGCTACTGCTGTGCGTCTCGCGAGGGGCACGG- 686 consensus_6228#2 GCTTCCAGCG---GAGTAAGTGTGTGTTATTGGT-------------------------- 572 consensus_6228#1 ------------------------------------------------------------ consensus_6228#3 GGCTTATAAACNGGNAACAANCCACCTGCGCGCCAATTGTTCCACCGCNAACGCTAACCG 472 consensus_6228#0 ------------------------------------------------------------ consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ------------------------------------- consensus_6228#3 ATCACAACCGAGACATGGCACACGANTACCGCGGGGA 509 consensus_6228#0 ------------------------------------- consensus_6228#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||