|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence
[AGGCAGAATCGCCACGAGGTGAGTAGGAGCTGAAGAACCAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGACAGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCGACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGCTGGAACTCCGAGCTGGGACATCGGGATGGTTGGGCGGAATATTTNCACGGGGAAAACCACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTTTTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACATCCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTCCAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG]
[+] EMBL BX467528 [AGGCAGAATCGCCACGAGGTGAGTAGGAGCTGAAGAACCAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGACAGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCGACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGCTGGAACTCCGAGCTGGGACATCGGGATGGTTGGGCGGAATATTTNCACGGGGAAAACCACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTTTTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACATCCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTCCAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG]
consensusID : consensus_6233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 817 fasta sequence
[CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA-TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAA-ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA-AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC-AGAAAACAGCA-GCGGA-GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAGAAAAATTATCTCACTATAGAAAATCTATTTCTGAAAGCTAAGGTGGAGCTTCATCAAGCGCTGGAGAAGAAAGAATGCTTACCGAACATTTGTGTGCAATCATTTNCCACAAT]
[+] EMBL BM641192 [CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAACACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAA ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AGAAAACAGCA GCGGA GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAG ]
[+] EMBL AL694158 [ cccgaggttAGTAGGAG CTGAAGAACAAAAAAACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAAGTTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCG CTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACA AACCCTATTCAACAAGCCGTCG CTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAATCCTAGTGCTTCCAANATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGANAGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AGAAAACAGCAGGCGGACGGCGA ]
[+] EMBL BX622410 [ AACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCTGAGGATGAGTCAATCTTAGTGCTTCCAA ATCAGCCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTACTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTCAAAAAAACAGCA GCGGA GGCGAACAAAATTCAGGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGCCTACACTTTTCAAACGTTGAGAAAAATTATCTCACTATAGAAAATCTATTTCTGAAAGCTAAGGTGGAGCTTCATCAAGCGCTGGAGAAGAAAGAATGCTTACCGAACATTTGTGTGCAATCATTTNCCACAAT]
[+] EMBL BX625397 [ AACTGTTGCTTTTACGGAAGTTTTACAAAAATGTCCAAACAA TTTGTTGGTTTCTCTGACGATGACATCTTCAAGATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAGACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAATGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACAGCACCCTATTCAACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCTGAGGATGAGTCAATCTTAGTGCTTCCAA ATCANCCAGTAAAAAGNCGGTCATTCNAACCAACTGTTGCTAGCACTATGCTAGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTACTAACTCCCTTCAAAGGTATGTCGCTCAAGGATTTTGAACAGCAGCGAAAACTGATGGA AGAACAGAACAGACAGAAGCGGGATATTCTCCATAAAGCAATAGAGCAACATGCTC AAAAAACAGCA GCGGA GGCGAACAAAATTCANGAGATAAAATCAGAGCTAACCCGGCTGGACTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGNCTACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6233#0 AGGCAGAATCGCCACGAGGT--GAGTAGGAGC-TGAAGAACCAAAAAACTGTTGCTTTTA 57
consensus_6233#1 -----------CCGCAAACTTCGAGTAGGAGCCTGAAGAACAAAAAAACTGTTGCTTTTA 49
** * * * ********** ******** ******************
consensus_6233#0 CGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAA 117
consensus_6233#1 CGGAAGTTTTACAAAAATGTCCAAACAATTTGTTGGTTTCTCTGACGATGACATCTTCAA 109
************************************************************
consensus_6233#0 GATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAG 177
consensus_6233#1 GATCACGCGACAAACAAGCAGCAAAGAAAAGGCAAAGGAACTGTCGCGACCGCATAGCAG 169
************************************************************
consensus_6233#0 ACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAA 237
consensus_6233#1 ACACCCCAAAGCACCGCCAGGCGCGGTGAAATTTGTTCCGCCGCCTACCATCGTAGATAA 229
************************************************************
consensus_6233#0 TGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCACGAACACCCTATTC 297
consensus_6233#1 TGGCAATCTTAGCACAGTCAGTTGTGTCGACTCCAGCATTTACCCAC-AGCACCCTATTC 288
*********************************************** * **********
consensus_6233#0 AACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAA 357
consensus_6233#1 AACAAGCCGTCGCCTTTAAACCACTGCCTCAAATGATAAATGCTCCGGAGGATGAGTCAA 348
************************************************************
consensus_6233#0 TCCTAGTGCTTCCAAATCAGCNCAGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGC 417
consensus_6233#1 TCCTAGTGCTTCCAAATCAGCC-AGTAAAAAGTCGGTCATTCGAACCAACTGTTGCTAGC 407
********************* *************************************
consensus_6233#0 ACTATGCTAGGGCGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAA 477
consensus_6233#1 ACTATGCTAGG-CGCCACCGGCATGCGGACCAATGTAAATGAGGTGCTAACTCCCTTCAA 466
*********** ************************************************
consensus_6233#0 AGGTATGTCGCTCAAGGATTTTGGAACAGGAGCGAAAACTGATGGCAGAACAGAACAGAC 537
consensus_6233#1 AGGTATGTCGCTCAAGGATTTTG-AACAGCAGCGAAAACTGATGGAAGAACAGAACAGAC 525
*********************** ***** *************** **************
consensus_6233#0 AGAAAGCGGGATATTGCTCCATAAAGGCAATAGAGGCAACATGCTCAGGAAAGAACAGCG 597
consensus_6233#1 AGAA-GCGGGATATT-CTCCATAAAG-CAATAGAG-CAACATGCTCAGAAAACAGCAGCG 581
**** ********** ********** ******** ************ *** * *****
consensus_6233#0 ACGCCGGAGGCGGAAGCAAANAATTCCAAGGACGACTCACANATCAGAGGNTAACCGGGC 657
consensus_6233#1 ------GAGGCGA----ACAAAATTCAGGAGATA------AAATCAGAG-CTAACCCGGC 624
****** * * ***** ** * ******* ***** ***
consensus_6233#0 TGGAACTCCGAGCTGGGAC--ATCGGGATGGTTGGGCGGAA-TATTTNCACGGGGAAAAC 714
consensus_6233#1 TGGA-CTCCGAGCTGGCATCGGATGTGGCGATTTTACGGAAACAAATTGATGCGGCAAGC 683
**** *********** * * * * ** ***** * * * * ** ** *
consensus_6233#0 C-ACACATTGNAATTGCCGGGAAAGGCCCTAACAACCNTTTGTTAGCACAAAACCGGGTT 773
consensus_6233#1 CTACACTTTTCAAACGTTGAGAAA---------AATTATCTCACTATAGAAAATCTATTT 734
* **** ** ** * * **** ** * * * **** * **
consensus_6233#0 TTNGACGGCAAGCAACGCATNTCANTCCTNTCNCCAAGCTCGNNNTTGGGAACAAGACAT 833
consensus_6233#1 CTGAAAGCTAAG--------GTGGAGC--TTCATCAAGCGCTGGAGAAGAAAGAATGCTT 784
* * * *** * * ** ***** * * ** ** * *
consensus_6233#0 CCGTAAGATTGACNCTGGGANAAAGGCCTTAACAGGAGGNTGGGGAACGCTTAACCACTC 893
consensus_6233#1 ACCGAACATTTGTGTGCAATCATTTNCCACAAT--------------------------- 817
* ** *** * ** **
consensus_6233#0 CAAAAGGGCGCCCCTGAGAGACGACTAGGNACACGGCAGANAATCNGGGTTACCCGG 950
consensus_6233#1 ---------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||