cluster # 6237

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Anopheles gambiae
cluster # 6237 cluster # 6237 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6237#0 length = 1127 sequences # 4

consensus_6237#1 length = 504 sequences # 1

consensusID : consensus_6237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1127
fasta sequence

                              [ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGATCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCGTGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAAAAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGACTCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGGCCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATCGCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAAACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTCGAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTCCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGAAGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAACGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGATAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA]

[+] EMBL AL933506             [ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGATCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCGTGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAAAAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGACTCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGGCCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM652722             [                                                                                                                                                                                                                                                                                                                                      ATAGGCAAAGAAACAGATCACCTGTTCGTTCGAGCCATCGGTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGAGAAACACAGGGGGGGTCGTTCCCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATCGCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAAACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTCGAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTCCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAA                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX608908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          acCAACCAGCCCAAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCGGAAGGTGCGAAACTTTGGACTCGTCACAGCGTCCGGTGAAAAGTTGGCCACCACCACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGAAGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAACGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGATAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCG  ]
[+] EMBL BX622748             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA]




>consensus_6237#0
ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGA
TCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGA
AGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCG
TGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAA
AAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGAC
TCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGG
CCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTC
CCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATC
GCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAA
ACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTC
GAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCG
GAAGGTGCGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTCCACCCG
GTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCAACGGCC
AACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGAAGAGAA
ACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAACGTGAA
GCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGATAAGGA
GTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCGAAACGGTCGAATCGCGCATTCG
TTCGAATCGGAACAATATTCAGCGATCGAACGGTGCCATGGATAGGAATTTCGTGAAGCG
ATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA

consensusID : consensus_6237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [GAATCGCCCCGAGGNAAAAGAGCACAAGAAGAAGAGCAGAAAAGCAAACGCCGAAGCGATAGCAGTGCGTCCGGGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACAAGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGTATGACAAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTGGCATCGCAACAGGGAACCAGGCAGCGNGGCGCGCGAACAAAGTGTCGACTCGNTCCGGATCGGACTAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAGGCTGGAGGAACAGGGCTCGGCGTGACTGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCACACACGCACGCGTGTCACGGCGCACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTTCGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC]

[+] EMBL AL932878             [GAATCGCCCCGAGGNAAAAGAGCACAAGAAGAAGAGCAGAAAAGCAAACGCCGAAGCGATAGCAGTGCGTCCGGGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACAAGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGTATGACAAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTGGCATCGCAACAGGGAACCAGGCAGCGNGGCGCGCGAACAAAGTGTCGACTCGNTCCGGATCGGACTAGAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAGGCTGGAGGAACAGGGCTCGGCGTGACTGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCACACACGCACGCGTGTCACGGCGCACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTTCGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC]




>consensus_6237#1
GAATCGCCCCGAGGNAAAAGAGCACAAGAAGAAGAGCAGAAAAGCAAACGCCGAAGCGAT
AGCAGTGCGTCCGGGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAA
AAGTACAAACAAGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTA
ACCATGAAGTATGACAAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTGGCATCGC
AACAGGGAACCAGGCAGCGNGGCGCGCGAACAAAGTGTCGACTCGNTCCGGATCGGACTA
GAAGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAGGCTGGAGGAACAGGGCTCGG
CGTGACTGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCACACACGCACGCGTG
TCACGGCGCACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTTCGTTCACGCACGGA
ACACGCTGTAACAACGACTCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6237#0      ATCCCCCNAGGTTAATATGACAAGCTGACCAAAGNCCTGGACATGATGGGTAGCGGTGGA 60
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      TCGAAAGGGAAAAGGCAGCGGGCGCGCGAACAAAGTGCCGACTCGTCCGGATCGGATAGA 120
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      AGAGGCACGCGCCGACGGCAGGATGATCGGTACGGCAAGCGGGAGGAACATGGTACGGCG 180
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      TGATGATCGANATAGAGGGAGAACAAATGCTAGCAAAGAGCGTTCACGGGATGTGAGGAA 240
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      AAGCCGAAGAGATTCTTCAGAGGAAAGTGTAAAAGATCGAAAGCGAGATAGAAAACAGAC 300
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      TCATTCAGAGAGAGATAGAAGTAGGGATAGGCAAAGAAACAGATCACCTGTTCGTTCCGG 360
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      CCACCGTTCTCCCGTGCGTAAAGCGGCCCCATCGAAAGACAAACACAGTCGTGGTCGTTC 420
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      CCGGTCAAGATCTCCCGAAAGGAAGCAGTCGCACAAGGAGACGAAACGTCGGTCACGATC 480
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      GCGGAGCAACCGGCGACGTAGCCGAAGTCCCGCACCAGAACACAGCAAACCGAAAGCGAA 540
consensus_6237#1      ------------------------------------------------------------
                                                                                  

consensus_6237#0      ACCCCGCAGAGCACCATCCAGCTCGTCATCCTCATCGTCCGGATCGGATTCGGACGCTTC 600
consensus_6237#1      ----------------------------------------GAATCG--CCCCGAGGNAAA 18
                                                              * ****    * ** *    

consensus_6237#0      GAATCAACCAGCCCGAACACGCCCAGCACCCGACGACTCGGACGATGAACGGCGCGTCCG 660
consensus_6237#1      AGAGCA--CAAGAAGAAGA-GCAGAAAAGCAAACG-CCGAAGCGAT-AGCAGTGCGTCCG 73
                        * **  **    *** * **  *  * *  *** *     **** * * * *******

consensus_6237#0      GAAG-----GTG-CGAAACTTCGGACTCGTCACAGCGTCCGGTGAAAAGTTGGACACCTC 714
consensus_6237#1      GGAGCGACAGTGACGGAAGCGCGGATTTAGACAAGCTGCTGGCGGAAAAGTACAAACA-- 131
                      * **     *** ** **   **** *      ***  * ** * ***  *  * **   

consensus_6237#0      CACCCGGTCCGAGGTACGGCTGTACAAGCGCGAAGAGATCAAAGCCGAACAGTCAAAGCA 774
consensus_6237#1      -AGGTAGCCGGAGAAGTGGCAGCGAAGGCGTGAGCATTGATAAGCTGCTAACCATGAAGT 190
                       *    * * ***    *** *   * *** **  *     **** *   *     *   

consensus_6237#0      ACGGCCAACGTGGAGCAAACCGCAGGAAAAGAAGCGACCGCTGTCCGAGCAGGAGCTGGA 834
consensus_6237#1      ATGAC--AAGCTGACCAAAGAGCTGGACATGATGNGGTAGCGGTG-GCATCGCAACAGGG 247
                      * * *  * *  ** ****  ** *** * ** * *   ** **  *    * * * ** 

consensus_6237#0      AGAGAAACGGCTGGCCATGATGAGCAATGCCCAGTGGCGGGATAAGGAACGCGAATCGAA 894
consensus_6237#1      AACCAGGCAGCGNGGCGCG-CGAACAA-----AGTGTCG----ACTCGNTCCGGATCGGA 297
                      *   *  * **  * *  *  ** ***     **** **    *       ** **** *

consensus_6237#0      CGTGAAGCGGTACGAATCGGAAGATCACCGGGAGGATGCGAAGGAAAGCCGAGAGTTCGA 954
consensus_6237#1      CTAGAAGAGGCACGCGCCGACGG-----CAGGATGATCGGTACGGCAGGCTGGAG----G 348
                      *  **** ** ***   **   *     * *** ***  * * *  ** *  ***     

consensus_6237#0      TAAGGAGTTTCTCACGAAGCAGCTGAAACGGGCGGCAGCGAGCG-AAACGGTCGAATCGC 1013
consensus_6237#1      AACAGGGCTCGGCGTGAC-TGATCGAGATGCGACGCGGCACGAGCAAACTGCCTAGCCAC 407
                       *  * * *   *  **       ** * * *  ** **  * * **** * * *  * *

consensus_6237#0      GCATTCGTTCGAATCGGAACAATATTCAGCGATCGAACG---GTGCCATGGATAGGAATT 1070
consensus_6237#1      ACACGCACGCGTGTCACGGCG-CACTTGCTGCCGGAACACACGCCCGACAAGCAGGACTT 466
                       **  *   **  **    *   * *    *   ****    *  * *     **** **

consensus_6237#0      TCGTGAAGCGATGAACGATTTTTAGGACTGATTGGTTGAATACTAATCTTGTGCGGA 1127
consensus_6237#1      CGTTCACGCACGGAACACGCTGTAACAACGACTCGCAC------------------- 504
                         * * **   ****    * **  *  ** * *