cluster # 624

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Anopheles gambiae
cluster # 624 cluster # 624 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_624#0 length = 677 sequences # 1

consensus_624#1 length = 544 sequences # 1

consensusID : consensus_624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGGTTTCACATTTCGTTTCCTCAATATTTTACAAACAAAAAAACATGTCTGCTACTCCGGATCGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGAAATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAATGGATACAAGCTGCAGACAAAGGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAAAACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTGTATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTGGTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGTTGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACGAGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGACCACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGAAAGAGAATCGATTATTAGAATGATGTCTTTTGAATACAAATTCACATCATAACTAAACAATCAAACTATGGTACGATTATAGAC]

[+] EMBL BM620721             [CCGGTTTCACATTTCGTTTCCTCAATATTTTACAAACAAAAAAACATGTCTGCTACTCCGGATCGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGAAATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAATGGATACAAGCTGCAGACAAAGGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAAAACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTGTATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTGGTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGTTGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACGAGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGACCACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGAAAGAGAATCGATTATTAGAATGATGTCTTTTGAATACAAATTCACATCATAACTAAACAATCAAACTATGGTACGATTATAGAC]




>consensus_624#0
CCGGTTTCACATTTCGTTTCCTCAATATTTTACAAACAAAAAAACATGTCTGCTACTCCG
GATCGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGA
AATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAA
TGGATACAAGCTGCAGACAAAGGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAA
AACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTG
TATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTG
GTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGT
TGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACG
AGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGAC
CACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGAAAGAGAA
TCGATTATTAGAATGATGTCTTTTGAATACAAATTCACATCATAACTAAACAATCAAACT
ATGGTACGATTATAGAC

consensusID : consensus_624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [CGACCCACGCGTCCGGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGAAATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAATGGATACAAGCTGCAGACAAATGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAAAACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTGTATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTGGTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGTTGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACGAGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGACCACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGA]

[+] EMBL BM641755             [CGACCCACGCGTCCGGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGAAATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAATGGATACAAGCTGCAGACAAATGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAAAACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTGTATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTGGTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGTTGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACGAGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGACCACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGA]




>consensus_624#1
CGACCCACGCGTCCGGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAA
CATCGCCAGGAAATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGC
TACACCAAAAATGGATACAAGCTGCAGACAAATGAATCTCATACTGTAATGCGATAAGAA
ACACGAAGAAAAACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGA
ACTTACAATTGTATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAA
CAAATGCCTTGGTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAG
ATGTAATTGGTTGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTT
CATCATACACGAGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTA
CAACGCTTGACCACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAAC
GAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_624#0      CCGGTTTCACATTTCGTTTCCTCAATATTTTACAAACAAAAAAACATGTCTGCTACTCCG 60
consensus_624#1      -------------------------------------------------CGACCCACGCG 11
                                                                      *  *     **

consensus_624#0      GATCGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGA 120
consensus_624#1      TCCGGGCAAAGTATTACCTCCTATAAACTCAAATCCCCACGGACTCCAACATCGCCAGGA 71
                         ********************************************************

consensus_624#0      AATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAA 180
consensus_624#1      AATGTGGCAACTTTAAGAATACAGGAGGCTATTGCGAGCATTATAGAGCTACACCAAAAA 131
                     ************************************************************

consensus_624#0      TGGATACAAGCTGCAGACAAAGGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAA 240
consensus_624#1      TGGATACAAGCTGCAGACAAATGAATCTCATACTGTAATGCGATAAGAAACACGAAGAAA 191
                     ********************* **************************************

consensus_624#0      AACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTG 300
consensus_624#1      AACATCCTGCCACAATCTGCGACAACAGATCCGGATCCTTATCCCGAGAACTTACAATTG 251
                     ************************************************************

consensus_624#0      TATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTG 360
consensus_624#1      TATTGTAAAAATCTGATGGTGATGGTTACAATAATGGAAGATGTCAAAACAAATGCCTTG 311
                     ************************************************************

consensus_624#0      GTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGT 420
consensus_624#1      GTGGCTATGGAGAAAATTAAATCCTTGAACGAGTTTTTCGCCCATCAAGATGTAATTGGT 371
                     ************************************************************

consensus_624#0      TGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACG 480
consensus_624#1      TGCACATGGAACTACCGTAAAACGCTAGACGCCGTTGAACAAATCATTTCATCATACACG 431
                     ************************************************************

consensus_624#0      AGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGAC 540
consensus_624#1      AGGGAAATTAGTCTTCGAAAGTTTGTGGCAGAACAGATCGGGCACTCTACAACGCTTGAC 491
                     ************************************************************

consensus_624#0      CACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGAAAGAGAA 600
consensus_624#1      CACCTGACGTACGTTGCAATCAGCTGGAACCACGGTATTGACATCGAACGAGA------- 544
                     *****************************************************       

consensus_624#0      TCGATTATTAGAATGATGTCTTTTGAATACAAATTCACATCATAACTAAACAATCAAACT 660
consensus_624#1      ------------------------------------------------------------
                                                                                 

consensus_624#0      ATGGTACGATTATAGAC 677
consensus_624#1      -----------------