These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1563 fasta sequence [TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGAGTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGATGATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTATCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGTACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA----AGCACAAA----GC-AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGG-TTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCACACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTTGAGAGGGATACAACCACAATATTCGTGTTATGTGTGCCTAGTTTACATCATTATTGTTTAAAAAACAGCATACATATATTTTTCTATTATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGTATGAATGTATGTGAG] [+] EMBL CNS095GE [TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGAGTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGATGATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTATCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGTACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA AGCACAAA GC AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGACAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCA ] [+] EMBL BM596701 [ gGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCAAAAGCGTTCACATAATTGTACATATTGCACAGCAAAATGCAAACCTGCGTATCGTGTAGAGTGAAAAACAATGGCATGATTGCTATTTATCAGCATCCAAATGGGTTGAATGAGATGTTTCACTCAATTACCGACATAAAGGTACAACCGGAAGAACATCTTTGTGTGCCGTGCTATGATGATTTGAAGGGAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACCACGGTTATCGTCT ] [+] EMBL BX624847 [ GCGTCATTAGTAGTTGTACGGATGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACAGAAAACAATAGCAGCAATGGCAGGGCGAACACGTCTAATCTTACACCGGAA G ATCCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGATGTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCTCAACTTATGACAATGCACCAAAAGACAATGTGGGTACCGATGCCGCTAAAGAACAAATCGGCGACCAAACCATAACTGCAGCCACCCAAGAGAGGGGTCAATCCTCTTCTCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGACAGACAAGATCGAACATACCGAGTCACACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGGAAATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCACACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTC ] [-] EMBL CNS095GF [ AACCGTTAGCAAATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAA AGCACAAA GC AAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAATCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTTACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTCAAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGG TTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTTTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTTGAGAGGGATACAACCACAATATTCGTGTTATGTGTGCCTAGTTTACATCATTATTGTTTAAAAAACAGCATACATATATTTTTCTATTATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGTATGAATGTATGTGAG] consensusID : consensus_6246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence [GAATCGCGCACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAACCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACCAGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCCGGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGANACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAACACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGGCCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTTTAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCGCCCTTTTTTTTC] [+] EMBL BX467490 [GAATCGCGCACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCACGTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCACACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGTCCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCACACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCTCGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGGAAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGGCCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACACATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAATTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAACCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACCAGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCCGGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGANACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAACACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGGCCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTTTAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCGCCCTTTTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6246#0 TTTTTTTTTGTTTCCACCGAGTGTTTGGAAATGATCTGCCTCAACACAGTATTTCCTGCA 60 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 AAAGCGTTCACATAATTGTACATATTGTACAGCAAAATGCAAAGCTGTGTATCGTGTAGA 120 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 GTGAAAAACAATGGGATGATTGCTATTTATCAGCATCCAAATGGGCTGGATGAGATGTTT 180 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 CACTCAATTACCGACATAAAGGTACAACCGGAAGAATATTTGTGTGTGCCGTGCTATGAT 240 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 GATTTGAAGGTAGCATATCGCTTCAAACAGAGATGCATTCAGAACACGGCACTACGGTTA 300 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 TCGTCTCGGGCTAAAAAGACGACACATGCTCCTGCAGATCAGAGCGTCATTAGTAGTTGT 360 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 ACGGTTGTTTACACAACGTATGATAAATCTGTTCCGGAATCAACTATAAATCAAAATACA 420 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 GAAAACAACAGCTGCAATGGCAGGGCGAGCACGTCTAATCTTGCACCGGAAATGTCAAAT 480 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 CCTTCGCCGCTTCCCAAGATAGAATTATGCATAGAAAATGAAACGATACAACAGGATGAT 540 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 GTTGAAATTAGCGAAGAACTCATTGACCCGCTACAAGACGAGGAAGATCAACCGTTAGCA 600 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 AATTATATAATCGGGGTAATAGAAAGCGCAACTAATGACAATGCACCAAAAGACAAAGCA 660 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 CAAAGCAAAGAACAAATCGGCGACCAAACCATAACAGCAGCCACGCAAGAGAGTGGTCAA 720 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 TCCACATCCCTTCTACCGAAACTGCATAGCCTGATGTGTGAGTACTGTTTCAAAGAGTTT 780 consensus_6246#1 ------------------------------------------------------------ consensus_6246#0 ACCCTGCTGGCCGACAAGATCGAACATACCGAGTCGCACAAATCGGAAGCGAAACCATTC 840 consensus_6246#1 ---------------------------------------------------GAATCGCGC 9 ** * * consensus_6246#0 AAATGTGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCAC 900 consensus_6246#1 ACGAGGGTGCAGGAAGGTTGCGGCAGATCATTTAAAGACCGCGTAGGTTTGCGATCGCAC 69 * * ****************************************************** consensus_6246#0 GTGCGCATCCATTCCGCCGTAAGGCGGTTCGGGTGTCGGTACTGCCCGAGGCGATTCCAC 960 consensus_6246#1 GTGCGCATCCATTCCGCCGTGAAGCGGTTCGGCTGTCGGTACTGCCCGAGGCGATTCCAC 129 ******************** * ********* *************************** consensus_6246#0 ACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGT 1020 consensus_6246#1 ACGCTGGGCAATCAGATGGCGCACGAGCGAACACACAGCGGGGAGAAGCCATTTATCTGT 189 ************************************************************ consensus_6246#0 CCAAAGTGTGGCAAAGG-TTCGCGGAGGTAGGCAATCTCAAGAATCACATTCGCTTCCAC 1079 consensus_6246#1 CCAAAGTGTGGCAAAGGCTTCGCGGAGGGAGGCAATCTCAAGAATCATATTCGCTTCCAC 249 ***************** ********** ****************** ************ consensus_6246#0 ACTGGCGAACGGNCGTACGCTTGCAATCTGTGCGACNAATCGTACAGAACGTACTACTCT 1139 consensus_6246#1 ACCGGCGAACGGCCGTACGCTTGCAATCTGTGCGACAAATCGTACAGAACGCACTACTCT 309 ** ********* *********************** ************** ******** consensus_6246#0 CGATCGGTTCATATGCGCTCACATACCAACGAACGACCGAATCTGTGCGGTGACTGCGGG 1199 consensus_6246#1 CGATCGGTTCATATGCGCTCACATACCAACGAACGACCGTATCTGTGCGGTGACTGCGGG 369 *************************************** ******************** consensus_6246#0 AAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGG 1259 consensus_6246#1 AAAGGGTTCTATTCGAGCGGAAAGCTGACCATCCACCGCCGGACGCACACTGGCGAACGG 429 ************************************************************ consensus_6246#0 CCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACAC 1319 consensus_6246#1 CCCTACGAATGTACGAGCTGTACGGCAAGGTTTTCCGAAACGTCCTCGCTTAGGCGACAC 489 ************************************************************ consensus_6246#0 ATGGTTGAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAA 1379 consensus_6246#1 ATGGTTAAAAAACACTTAAATAAGTGAACATATATTTAACTGTGTAGGGTAGTATGCCAA 549 ****** ***************************************************** consensus_6246#0 TTGTTGCAGCACTTAAGGGAACAGCCAACGTATTTCATAAGTTT---GAGAGGGATACAA 1436 consensus_6246#1 TTGTTGCACACTTAAAGGGAACAGCCAACGTATTTCATAAGTTTTGAGAGGGGATTACAA 609 ******** * ****************************** *** ** ***** consensus_6246#0 CCACAA-TATTCGTGTTATGTGTG--CCTAGTTT-ACAT-CATTATTGTTTAAAAAA--C 1489 consensus_6246#1 CCACAAATATCGGTTGTATGTGTTGCCCTAGTTTTACATTCATTATGGTTTAAAAAAACC 669 ****** *** ** ******* ******** **** ****** ********** * consensus_6246#0 AGCATACATATATTTTTCTAT-TATTCAGGAGGAACGACTTTGCCGTATCGCTTAAAAGT 1548 consensus_6246#1 AGCATACATATATTTCTATACATTCCCAGGAAGCAAACCCNGAACACTTTTTTTCGCCCC 729 *************** * ** * ***** * * * * * ** consensus_6246#0 A-TGAATGTATGTGAG-------------------------------------------- 1563 consensus_6246#1 GGTNAATCTCCGCTTTTACAACAAGGTTTTTTCGCACACTTCGTCATCTCGCTTGGAGAN 789 * *** * * consensus_6246#0 ------------------------------------------------------------ consensus_6246#1 ACTTTTTTANAAANGCCACGAGAAACAAANTTGGCATTAATCTGGTCTTCCACAGAAAAC 849 consensus_6246#0 ------------------------------------------------------------ consensus_6246#1 ACTNCNCTCTGGGGATATTTTTTTAAAAACCCCCCTCTTATTTTTCCCACAAAAATAGGG 909 consensus_6246#0 ------------------------------------------------------------ consensus_6246#1 CCCCCCAAAAANTTTTCCCCCGGAAAAAAGCTTGTTGGTTTNTATCTCACCCCACTTTTT 969 consensus_6246#0 ------------------------------------------------------------ consensus_6246#1 TAACGCCTTATAAAGACCNCNNNCCACAAGGTGCCCCAANAATAATATCTTCTCACACCG 1029 consensus_6246#0 ------------ consensus_6246#1 CCCTTTTTTTTC 1041 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||