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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 954 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATGGGTATAGGTGGATGAAAGTTCAGCAAAGAGC--CTCTCCGAAACGGATGGAGATATTTAAGTGGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATCAAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAAGGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAGATTGGTTATCAAATGTAAAA]
[+] EMBL BM613454 [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGT ]
[+] EMBL BM630094 [ ccgAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCACATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATGGGTATAGGTGGATGAAAGTTCAGCAAAGAGC CTCTCCGAAACGGATGGAGATATTTAAGTGGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAA ]
[+] EMBL BM604862 [ ccgAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGGGAGTAAAGTAGAAAGAGCGGTTCGAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTAAACAAAACAAACAAAC AAACTGAAAAACTCACATAATATAGCTAAAACCGGAACCGTTTTTGGTGTTGTGTGTGTGGGTGAACTGGCGGATGGGCATAGGTGGATGAAAGTTCAGCAAAGAGCCTCTCTCCGAAACGGATGGAGATATTTAAGTAGTAGACAAATTG TTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCTAAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATCAAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAAGGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAGATTGGTTATCAAATGTAAAA]
consensusID : consensus_6247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence
[CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCCATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATATATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAACAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCGAC]
[+] EMBL BM641001 [CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCCATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATATATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAACAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAA ]
[+] EMBL BM657200 [ ccgCAAACACAATCAAATGTACTGTACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGGAAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAAGAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAAAAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTTGGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGACTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAACACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAAGGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGGGAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAATTCTCAGTTAGATTTTTTCGAAATTCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6247#0 ------------------------------------------------------------
consensus_6247#1 CCGAAAACAACGTTTTTAAGTAGTGAATTACTAACAAAAAAGAATAAAACTACCAACTCC 60
consensus_6247#0 ------------------------------------------------------------
consensus_6247#1 ATCACACCACAGCCCAAACAAGCGAAACACACAAAACAAACAATGTAATGCTATATATAT 120
consensus_6247#0 ------------------------------------------------------------
consensus_6247#1 ATAAATCTAATGCGTATAAAGGAAGTGGAGAGAAAGTGACAGTAACAAAAAGAAGGTAAA 180
consensus_6247#0 ------------------------------------------------------------
consensus_6247#1 CAATTTACTCATAAACAAAACAACACACAAAAAAAAACACAAACACAATCAAATGTACTG 240
consensus_6247#0 -----------------------CCGCCCA--CGCGTCCGCCCACGCGTCCGAAGAGAGG 35
consensus_6247#1 TACAAAATGTGTTACTAAAACCTCTTTTTAACTGAGGGGAGAGAGAGAGAAAAAGAGAGG 300
* * * * * ********
consensus_6247#0 AAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAA 95
consensus_6247#1 AAGCAAAACATTGGTGGGGAACAAAGAATAATGGTGTGAAAAAAGTTGTATTACAAAAAA 360
************************************************************
consensus_6247#0 GAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAA 155
consensus_6247#1 GAAGGAGTGTAAGTGAAGCCCTGTATAGTAGAGTAAAACAAAAAAGCAAAACCACAAGAA 420
************************************************************
consensus_6247#0 AAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTT 215
consensus_6247#1 AAGAAGCGATAGAAAACAAATATGAAATCGTACTCATGGTGGTGAAACACCCCCTCTTTT 480
************************************************************
consensus_6247#0 GGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGA 275
consensus_6247#1 GGTAGAGAATGATAAAGAGATAGAGAGAAAGAGTAATGAGAAGAGCGCATCAATGAAAGA 540
************************************************************
consensus_6247#0 CTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAA 335
consensus_6247#1 CTAAAACAGACTTTTTTGCATCATTAAAGGATAAAAAAAGAGGGGAGAAGAAAGAAAAAA 600
************************************************************
consensus_6247#0 CACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAA 395
consensus_6247#1 CACAGTGTAAGAAGCCCATCATTTGTTAGGCCAAATTTGTACTTTAATTGTATGTAGAAA 660
************************************************************
consensus_6247#0 GGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGG 455
consensus_6247#1 GGTAGAGAGAAGAACAACAGAAGCAAAACAAACAAAATTATAAAATATGAACAAAAATGG 720
************************************************************
consensus_6247#0 GAGAGAGTAAAGTA-GAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAAT 514
consensus_6247#1 GAGAGAGTAAAGTAAGAAAGAGCGGTTCAAAAGCAAAAGGAGCAGAATGGTCAAAATAAT 780
************** *********************************************
consensus_6247#0 TCTCAGTTAGATTTTTTCGAAATTCAACAAAACAAACAAACAAAAAACTGAAAAACTCAC 574
consensus_6247#1 TCTCAGTTAGATTTTTTCGAAATTCGAC-------------------------------- 808
************************* **
consensus_6247#0 ATAATATAGCTAAAACCGGAGCCGTTTTTGGTGTTGTGTGTGTGGGTGAACCGGCGGATG 634
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GGTATAGGTGGATGAAAGTTCAGCAAAGAGCCTCTCCGAAACGGATGGAGATATTTAAGT 694
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GGTAGACAAATTGTTTGTTTTTTTTTTGCTATATTTGCAAACGGAAAAGTAGGAAGCTCT 754
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AAAATGTAAAGTAAAAGAGGGAAACACAAAACTAAAATAACAAAAAAGGAAAAACAAATC 814
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 AAACCACTAATGCCCATTAACAATTACACAAAACAAACACCACCAATAGGAGAAAGGAAA 874
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 GGACAGACCGAGAGAAAGAGAGAGAGAGAGAGAGAGGTAAATAAAAAACAGCTAATAAAG 934
consensus_6247#1 ------------------------------------------------------------
consensus_6247#0 ATTGGTTATCAAATGTAAAA 954
consensus_6247#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||