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Anopheles gambiae
cluster # 6261 cluster # 6261       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6261#0 length = 694 sequences # 2  
consensus_6261#1 length = 690 sequences # 2  
consensus_6261#2 length = 542 sequences # 1  

consensusID : consensus_6261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 694
fasta sequence
                              [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAATTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTGTAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGTAAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTGCCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCGGTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGGTAGGGCGG-CCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAACATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCGTACAGTTGATCACATGGATGGCCTTCAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTATCGGGACATCCAGCCTCGGGNCAATTCTTG]

[+] EMBL BM624207             [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAATTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTGTAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGTAAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTGCCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCGGTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGGTAGGGCGG CCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAACATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACA                                                                                                                                                                                                            ]
[-] EMBL AL932452             [                                                                                                                                                                                                                                                                                                                                                                                            GTCGGGTAGGGCGGCCCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCGTACAGTTGATCACATGGATGGCCTTCAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTATCGGGACATCCAGCCTCGGGNCAATTCTTG]


>consensus_6261#0 CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAA TTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTG TAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGT AAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTG CCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCG GTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATT GACTGCTCACCACCGTACTCGTCGGGTAGGGCGGCCTTGGGCAGGTGCGCATAAATCGTT TCCGAGTTGGGGAGATGGAAGTGTAACATTTCGGCCACACGTTTCTTCATGAACGGTTTC ACCAGGCACATGACGCGATCCAGAAAAGGCGTACAGTTGATCACATGGATGGCCTTCAGA CGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTACGACC CTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTC GTTATCGGGACATCCAGCCTCGGGNCAATTCTTG



consensusID : consensus_6261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence
                              [GTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGATTGCAAGCAATCGAACTAAACGAAAAGCAAAGCCACACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGGGATCANGTCCC]

[-] EMBL BM657487             [GTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGATTGCAAGCAATCGAACTAAACGAAAAGCAAAGCCACACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGG           ]
[-] EMBL BX626699             [                                                                                      CTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGNCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCGCAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTGTCGAAGATCGTCGGATTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTTGCATACTCGAGATCACCATGGGTTGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGGTTGCAAACAATCGAACTAAACGAAAAGCAATGCCACACTGGTAAAGATAAAAAGCTTTTAAAGGAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACTGTGATCANGTCCC]


>consensus_6261#1 GTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAA GCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGAT CATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATC GGGATCACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGG TAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCG GTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTT CGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTGCAGTAATGTTGGATGTAT ATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTC TAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGATTG CAAGCAATCGAACTAAACGAAAAGCAAAGCCACACTGGTAAAGTTAAAAAGCTTTTAAAA TAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTG CCAAACCGTGTCCGACCGGGATCANGTCCC



consensusID : consensus_6261#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence
                              [TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGTAGGCGCCTTGGCCAGGTGCGCAATAAATCGTTTCCGATTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTTCAGACGCACCGGTTGTGCTTCCTGAGTTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACTGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTGCGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG]

[-] EMBL AL694277             [TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGTAGGCGCCTTGGCCAGGTGCGCAATAAATCGTTTCCGATTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTTCAGACGCACCGGTTGTGCTTCCTGAGTTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACTGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTGCGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG]


>consensus_6261#2 TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCG GTAGGCGCCTTGGCCAGGTGCGCAATAAATCGTTTCCGATTGGGGAGATGGAAGNTGTAG CATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAA AGGCTGTACAGTTGATCACATGGATGCCCTTCAGACGCACCGGTTGTGCTTCCTGAGTTA GCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGCGAAGCGTGAAGCCA TTCATGTCGAAGATCGGCACTGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCAT GCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTGCAATCA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGAGATGAACACGGTGGTTAAAACCC ATAGAGTATACAAANCATTCCTTTGCGTCCAACTCTCTCACCTATCGGTTAAACCTGGGG CG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6261#0      CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAA 60
consensus_6261#2      ------------------------------------------------------------
consensus_6261#1      -----------------------------------------------GTAGCGCATGTAG 13
                                                                                  

consensus_6261#0      TTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTG 120
consensus_6261#2      ------------------------------------------------------------
consensus_6261#1      --ACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGT 71
                                                                                  

consensus_6261#0      TAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGT 180
consensus_6261#2      ------------------------------------------------------------
consensus_6261#1      CGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGT-TGGATCATGC---GT 127
                                                                                  

consensus_6261#0      AAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTG 240
consensus_6261#2      ------------------------------------------------------------
consensus_6261#1      AGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTAT-CGGGATC 186
                                                                                  

consensus_6261#0      CCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCG 300
consensus_6261#2      ------------------------------------------------------------
consensus_6261#1      ACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCA-------CCGACG 239
                                                                                  

consensus_6261#0      GTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATT 360
consensus_6261#2      ------------------------TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATT 36
consensus_6261#1      GTAGGGGCACCATGTCA------ATTGCTTTTAAAATATTCATCACATTGCT-GTTGAGC 292
                                               * ** ** **  * ** **    ****   ***  

consensus_6261#0      GACTGCTCACCACCGTAC-TCGTCGGGTAGGGCGGCCTTGGGCAGGTGCGCA-TAAATCG 418
consensus_6261#2      GACTGCTCACCACCGTAC-TCGTCGG-TAGG--CGCCTTGGCCAGGTGCGCAATAAATCG 92
consensus_6261#1      GGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGA--GAATGA 350
                      *  *       * ** *  ******* * *    ***   *   *  **  *   ***  

consensus_6261#0      TTTCCGAGTTGGGGAGATGGAAGT-GTAACATTTCGGCCACACGTTTCTTCATGAACGGT 477
consensus_6261#2      TTTCCGA-TTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGT 151
consensus_6261#1      AAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTG----CAGT 406
                              ** *     * **        *   ***     * **  *        * **

consensus_6261#0      TTCACCAGGCACATGACGCGATCCAGAAAAGGC-GTACAGTTGATCACATGGATGGCCTT 536
consensus_6261#2      TTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTT 211
consensus_6261#1      AATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCA-------GTCCTT 459
                             *    **     *   ****   *** **   **    **       * ****

consensus_6261#0      CAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTAC 596
consensus_6261#2      CAGACGCACCGGTTGTGCTTCCTGAGT-TAGCGCATGTAGACGCGCAATGTCGACAGTAC 270
consensus_6261#1      CAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGC 519
                      **  **  ***      ****  ** *  *   * * * ** ** **  **  * *   *

consensus_6261#0      GACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAA-GATCGGCAC-GTCTCC 654
consensus_6261#2      GACC-TTGGTCATGTG-CGAAGCGTGAAGCCATTCATGTCGAA-GATCGGCACTGTCTCC 327
consensus_6261#1      G----TCGGTACTGTA-CAACGATTGCAAGCAATCGAACTAAACGAAAAGCAA-AGCCAC 573
                      *    * ***  ***  * * *  ** *  ** **      ** **   ***    *  *

consensus_6261#0      ACCGTCGTT-ATCGGGACATCCAGCCTCGGGNCAATTCTTG------------------- 694
consensus_6261#2      ACCGTCGTTCATCGGGACATCCGG--TTGGATCATGCGTAGATCGGCAATAATGAAAAAC 385
consensus_6261#1      ACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGT 633
                      ** *       *    *  *            **                          

consensus_6261#0      ------------------------------------------------------------
consensus_6261#2      GTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGA 445
consensus_6261#1      AAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGGGATCANGTCCC--- 690
                                                                                  

consensus_6261#0      ------------------------------------------------------------
consensus_6261#2      GAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTG 505
consensus_6261#1      ------------------------------------------------------------
                                                                                  

consensus_6261#0      -------------------------------------
consensus_6261#2      CGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG 542
consensus_6261#1      -------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)