These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAATTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTGTAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGTAAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTGCCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCGGTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGGTAGGGCGG-CCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAACATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCGTACAGTTGATCACATGGATGGCCTTCAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTATCGGGACATCCAGCCTCGGGNCAATTCTTG] [+] EMBL BM624207 [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAATTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTGTAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGTAAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTGCCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCGGTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGGTAGGGCGG CCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAACATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACA ] [-] EMBL AL932452 [ GTCGGGTAGGGCGGCCCTTGGGCAGGTGCGCATAAATCGTTTCCGAGTTGGGGAGATGGAAGTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCGTACAGTTGATCACATGGATGGCCTTCAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTATCGGGACATCCAGCCTCGGGNCAATTCTTG] consensusID : consensus_6261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [GTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGATTGCAAGCAATCGAACTAAACGAAAAGCAAAGCCACACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGGGATCANGTCCC] [-] EMBL BM657487 [GTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGATTGCAAGCAATCGAACTAAACGAAAAGCAAAGCCACACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGG ] [-] EMBL BX626699 [ CTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGNCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTATCGGGATCGCAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCACCGACGGTAGGGGCACCATGTCAATTGCTTTTAAAATATTCATCACATTGCTGTTGAGCGGATCGCGGTTGTCGAAGATCGTCGGATTGTTCTGCCGGAGGGTGTAGCCGAGAATGAAAATTTTCTTTGCATACTCGAGATCACCATGGGTTGAGTGAATGTACCGCTGCAGTAATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCAGTCCTTCAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGCGTCGGTACTGTACAACGGTTGCAAACAATCGAACTAAACGAAAAGCAATGCCACACTGGTAAAGATAAAAAGCTTTTAAAGGAAAACACACAACACCCGGGGGAGGACAAATGTAAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACTGTGATCANGTCCC] consensusID : consensus_6261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGTAGGCGCCTTGGCCAGGTGCGCAATAAATCGTTTCCGATTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTTCAGACGCACCGGTTGTGCTTCCTGAGTTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACTGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTGCGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG] [-] EMBL AL694277 [TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATTGACTGCTCACCACCGTACTCGTCGGTAGGCGCCTTGGCCAGGTGCGCAATAAATCGTTTCCGATTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGTTTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTTCAGACGCACCGGTTGTGCTTCCTGAGTTAGCGCATGTAGACGCGCAATGTCGACAGTACGACCTTGGTCATGTGCGAAGCGTGAAGCCATTCATGTCGAAGATCGGCACTGTCTCCACCGTCGTTCATCGGGACATCCGGTTGGATCATGCGTAGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTGCGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6261#0 CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTTACAAAATCTCAATTTATTTAA 60 consensus_6261#2 ------------------------------------------------------------ consensus_6261#1 -----------------------------------------------GTAGCGCATGTAG 13 consensus_6261#0 TTATAGGCCCTTACTTTCCCCCGGTTGGGGGGGACTCATATAGTATATCACCCTTCTTTG 120 consensus_6261#2 ------------------------------------------------------------ consensus_6261#1 --ACGCGCAATGTCGACAGTACGACCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGT 71 consensus_6261#0 TAAAAGGTTTCTAGTATAAAACTAAGTTAATGTACATATACAATACAAATAACACATTGT 180 consensus_6261#2 ------------------------------------------------------------ consensus_6261#1 CGAAGATCGGCACGTCTCCACCGTCGTTCATCGGGACATCCGGT-TGGATCATGC---GT 127 consensus_6261#0 AAATAAAATGCAACAATGCAGGGCACTGCGGTTTAATCAATTTCCAGTTTCCGTAGCGTG 240 consensus_6261#2 ------------------------------------------------------------ consensus_6261#1 AGATCGGCAATAATGAAAAACGTCTTAATGACATCGTTAAAATCAAACTTAT-CGGGATC 186 consensus_6261#0 CCAAAGAGATCATTGCCATTACTTCGTCGCGACTCATCGATCTTCCAGCGCGTACCATCG 300 consensus_6261#2 ------------------------------------------------------------ consensus_6261#1 ACAATCTACCAAACGATAGTAAATAAACTTGTCCTCACAGCCTTCCA-------CCGACG 239 consensus_6261#0 GTAATGGAATCGCGTTGCAATTTAATTCTGTTGAACCAATCCTCTTTATGCTTAATGATT 360 consensus_6261#2 ------------------------TTGCTGTTGAACCAATCCTCTTTATGCTTAATGATT 36 consensus_6261#1 GTAGGGGCACCATGTCA------ATTGCTTTTAAAATATTCATCACATTGCT-GTTGAGC 292 * ** ** ** * ** ** **** *** consensus_6261#0 GACTGCTCACCACCGTAC-TCGTCGGGTAGGGCGGCCTTGGGCAGGTGCGCA-TAAATCG 418 consensus_6261#2 GACTGCTCACCACCGTAC-TCGTCGG-TAGG--CGCCTTGGCCAGGTGCGCAATAAATCG 92 consensus_6261#1 GGATCGCGGTTATCGAAGATCGTCGGGTTGTTCTGCCGGAGGGTGTAGCCGA--GAATGA 350 * * * ** * ******* * * *** * * ** * *** consensus_6261#0 TTTCCGAGTTGGGGAGATGGAAGT-GTAACATTTCGGCCACACGTTTCTTCATGAACGGT 477 consensus_6261#2 TTTCCGA-TTGGGGAGATGGAAGNTGTAGCATTTCGGCCACACGTTTCTTCATGAACGGT 151 consensus_6261#1 AAATTTTCTTCGCATACTCGAGATCACCACGGGTCGAGTGAATGTACCGCTG----CAGT 406 ** * * ** * *** * ** * * ** consensus_6261#0 TTCACCAGGCACATGACGCGATCCAGAAAAGGC-GTACAGTTGATCACATGGATGGCCTT 536 consensus_6261#2 TTCACCAGGCACATGACGCGATCCAGAAAAGGCTGTACAGTTGATCACATGGATGCCCTT 211 consensus_6261#1 AATGTTGGATGTATATTCTGGGGCAGATGGGGCTGTGTTGTAATCCA-------GTCCTT 459 * ** * **** *** ** ** ** * **** consensus_6261#0 CAGACGCACCGGGTGTGCTTCCTGAGTGTAGCGCATGTAGACGCGCAATGTCGACAGTAC 596 consensus_6261#2 CAGACGCACCGGTTGTGCTTCCTGAGT-TAGCGCATGTAGACGCGCAATGTCGACAGTAC 270 consensus_6261#1 CAACCGTTCCGCTCCCTCTTCTAGATTAAACTCCTTTTCGATGCCCATCGTATAAATGGC 519 ** ** *** **** ** * * * * * ** ** ** ** * * * consensus_6261#0 GACCCTTGGTCATGTGGCGAAGCGTGAAGCCATTCATGTCGAA-GATCGGCAC-GTCTCC 654 consensus_6261#2 GACC-TTGGTCATGTG-CGAAGCGTGAAGCCATTCATGTCGAA-GATCGGCACTGTCTCC 327 consensus_6261#1 G----TCGGTACTGTA-CAACGATTGCAAGCAATCGAACTAAACGAAAAGCAA-AGCCAC 573 * * *** *** * * * ** * ** ** ** ** *** * * consensus_6261#0 ACCGTCGTT-ATCGGGACATCCAGCCTCGGGNCAATTCTTG------------------- 694 consensus_6261#2 ACCGTCGTTCATCGGGACATCCGG--TTGGATCATGCGTAGATCGGCAATAATGAAAAAC 385 consensus_6261#1 ACTGGTAAAGTTAAAAAGCTTTTAAAATAAAACACACAACACCCGGGGGAGGACAAATGT 633 ** * * * * ** consensus_6261#0 ------------------------------------------------------------ consensus_6261#2 GTCTTAATGACATCGTTAAAATCAAACTGCAATCAAGAGAGAGAGAGAGAGAGAGAGAGA 445 consensus_6261#1 AAGAGTAACACGCGGCCAAACGCTCTGCCAAACCGTGTCCGACCGGGATCANGTCCC--- 690 consensus_6261#0 ------------------------------------------------------------ consensus_6261#2 GAGAAGGAAAGAGATGAACACGGTGGTTAAAACCCATAGAGTATACAAANCATTCCTTTG 505 consensus_6261#1 ------------------------------------------------------------ consensus_6261#0 ------------------------------------- consensus_6261#2 CGTCCAACTCTCTCACCTATCGGTTAAACCTGGGGCG 542 consensus_6261#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||