These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence [CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG-AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG] [+] EMBL BM628804 [CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATG ] [+] EMBL BX626951 [ TATTACTTTTCGCGCACGGTGAATTCACGATCCCCCCGGCCATTTCGTACCGTGTGTGTGC GTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTGGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAAGGAGAAGAAGAAACACACCCCACCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGG AGCAGGGNCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG] [+] EMBL BM642032 [ ccgGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCATGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTT ] consensusID : consensus_6263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA] [+] EMBL BM652615 [CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA] consensusID : consensus_6263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG] [+] EMBL BM604566 [CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6263#1 ------------------------------------------------------------ consensus_6263#2 CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCG 60 consensus_6263#0 ------------------------------------------------------------ consensus_6263#1 ------------------------------------------------------------ consensus_6263#2 ACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGC 120 consensus_6263#0 ------------------------------------------------------------ consensus_6263#1 ------------------------------------------------------------ consensus_6263#2 GATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAG 180 consensus_6263#0 ------------CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTG 48 consensus_6263#1 ------CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAA 54 consensus_6263#2 AAGAAACACACCCCAGCTCTACTCT-TGCAGA---AGTGCGTGTGTGTGTGTGGGTGGAA 236 consensus_6263#0 AATTCACAATCCCCCCGGCCATTTCGTACCGT----GTGTGTGCGTGTGTGTGTGTGCAC 104 * * * * * * * * *** *** ********* *** * consensus_6263#1 AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 113 consensus_6263#2 AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 295 consensus_6263#0 GATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTC 164 * * ** ** * *** * * * * * * * * consensus_6263#1 GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 173 consensus_6263#2 GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 355 consensus_6263#0 CCCCCACCAAC-TCCGTTCAACGCCCGTCAGC-----GCCGCACACACGCACGAACGGTT 218 * ** * * * ** * ** * ** * * * *** consensus_6263#1 AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 233 consensus_6263#2 AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 415 consensus_6263#0 CCTGTGAGTGTGTCTGTTCC----TGTCCTGTGG-TACGAAAGCTTGCAGTGTGCAGT-G 272 * *** *** * *** **** ***** *** * * * * consensus_6263#1 CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 293 consensus_6263#2 CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 475 consensus_6263#0 CGTGCG-TGCGTGTGTGTG-TTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAG 330 * *** * ** ** * * * * ** * ** * * * * * * consensus_6263#1 TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 352 consensus_6263#2 TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 534 consensus_6263#0 CGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGT 390 * * * * * * * * * * * ****** * **** * ** consensus_6263#1 -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 406 consensus_6263#2 -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 588 consensus_6263#0 GCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGC 450 ***** * ** ** * ** * ******* ** * ** ** * * consensus_6263#1 GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAG 466 consensus_6263#2 GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG--------------------------- 621 consensus_6263#0 AGAAGGTG-GGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACC-GGTA 508 ** ** *** * ** * * * *** consensus_6263#1 GGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTG 526 consensus_6263#2 ------------------------------------------------------------ consensus_6263#0 GCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTT 568 consensus_6263#1 CGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACT 586 consensus_6263#2 ------------------------------------------------------------ consensus_6263#0 TGCCTTTTA-TTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCT 627 consensus_6263#1 GAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTC 646 consensus_6263#2 ------------------------------------------------------------ consensus_6263#0 GTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTG 687 consensus_6263#1 AATCCACA---------------- 654 consensus_6263#2 ------------------------ consensus_6263#0 CAGCTTCTTNCTCCTGACGACGGG 711 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||