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Anopheles gambiae
cluster # 6263 cluster # 6263       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6263#0 length = 711 sequences # 3  
consensus_6263#1 length = 654 sequences # 1  
consensus_6263#2 length = 621 sequences # 1  

consensusID : consensus_6263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 711
fasta sequence
                              [CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG-AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG]

[+] EMBL BM628804             [CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGG AAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATG                                          ]
[+] EMBL BX626951             [                           TATTACTTTTCGCGCACGGTGAATTCACGATCCCCCCGGCCATTTCGTACCGTGTGTGTGC  GTGTGTGTGTGCACGATTTCGTGCCTGGAGCGAAATTCTGGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAAGGAGAAGAAGAAACACACCCCACCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGG AGCAGGGNCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG]
[+] EMBL BM642032             [                                         ccgGGTGAATTCACAATCCCCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCATGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGTTCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTGTCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_6263#0 CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTGAATTCACAATCC CCCCGGCCATTTCGTACCGTGTGTGTGCGTGTGTGTGTGTGCACGATTTCGTGCCTGGAG CGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTCCCCCCACCAACTCCGT TCAACGCCCGTCAGCGCCGCACACACGCACGAACGGTTCCTGTGAGTGTGTCTGTTCCTG TCCTGTGGTACGAAAGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTC CGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGT GCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGA AGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGGTGGGCGGCCCCCGGGGGAAGAGAG AGAGAGAGCGAATCAATAGCAACCGGTAGCTAGCTGCTGCTGTCAAACGCGAAGAAAAGC GGCCCTAAACGTGGTCATCCTTGATTTTTGCCTTTTATTTTCGATTGTGAGACAGTGTGT GAGTGTGTGTGTAGTGTCCTGTGTCCTGTGGCTTCTACCCTGGTAAACGGGGAAGCAGGG CCACAAATGTAACACTTCACTGCTTTGCAGCTTCTTNCTCCTGACGACGGG



consensusID : consensus_6263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA]

[+] EMBL BM652615             [CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA]


>consensus_6263#1 CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTA ATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGT AAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAA ACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAA TCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTA ATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACG CGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTG TCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAGGGTTACACCGATCT TCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTGCGATTGGTAGTATG CGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACTGAAACTTGCAGTAA GAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTCAATCCACA



consensusID : consensus_6263#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG]

[+] EMBL BM604566             [CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTGTAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAACGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG]


>consensus_6263#2 CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCG ACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGC GATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAG AAGAAACACACCCCAGCTCTACTCTTGCAGAAGTGCGTGTGTGTGTGTGGGTGGAAAGTG TAATGTTGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGTGCAGT GTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGAAGAAG AAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAGCCTGC AATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTGTGTAG TAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCGGTCAACAA CGCGTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAGACACCGGAGTCTGCGGC TGTCCGTAGTTGCTGCTCGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6263#1      ------------------------------------------------------------
consensus_6263#2      CCGCTACTGCGAGGCTTGCAGTGTGCAGTGCGTGCGTGCGTGTGTGTGTTTGTCTGTCCG 60
consensus_6263#0      ------------------------------------------------------------
                                                                                  

consensus_6263#1      ------------------------------------------------------------
consensus_6263#2      ACGTTCTGATTCCTGCCTAGCCTCCTAGCGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGC 120
consensus_6263#0      ------------------------------------------------------------
                                                                                  

consensus_6263#1      ------------------------------------------------------------
consensus_6263#2      GATCAAACAGTAGGCGAGGAGCGTGTGTGCAACACTACCAGATAGGGAAAAAAGGAGAAG 180
consensus_6263#0      ------------CCGCCCACGCGTCCGTGCGAGGGTGTGTATTACTTTTCGCGCACGGTG 48
                                                                                  

consensus_6263#1      ------CCGGCTTTTTTACTATTGTGTACCGATTTAGTGCGTGTGTGTGTGTGGGTGGAA 54
consensus_6263#2      AAGAAACACACCCCAGCTCTACTCT-TGCAGA---AGTGCGTGTGTGTGTGTGGGTGGAA 236
consensus_6263#0      AATTCACAATCCCCCCGGCCATTTCGTACCGT----GTGTGTGCGTGTGTGTGTGTGCAC 104
                            *   *       * * *   * * *     *** *** ********* *** * 

consensus_6263#1      AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 113
consensus_6263#2      AGTGTAATGT-TGTAATTTAATAATAAGAAAGAAAAAAAAGATGACGTGCTGTTAACAGT 295
consensus_6263#0      GATTTCGTGCCTGGAGCGAAATTCTCGTTGCTGGAGCACCCTCGTCCGCCCGCCTGCCTC 164
                        * *  **  ** *    ***  *         *  *     * *   * *    *   

consensus_6263#1      GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 173
consensus_6263#2      GCAGTGTAAAAGTAAGCTTAAAGTGTGTGAAAAATTAGCAAAAGAAGAAGAAGAAGAAGA 355
consensus_6263#0      CCCCCACCAAC-TCCGTTCAACGCCCGTCAGC-----GCCGCACACACGCACGAACGGTT 218
                       *      **  *  * * ** *   ** *       **   * *     * ***     

consensus_6263#1      AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 233
consensus_6263#2      AGAAGAAACACGTCCGTTTCCGTGTGTGCTGTCCCTACGAGCCTCTGCCGCGATCGTCAG 415
consensus_6263#0      CCTGTGAGTGTGTCTGTTCC----TGTCCTGTGG-TACGAAAGCTTGCAGTGTGCAGT-G 272
                            *    *** *** *    *** ****   *****     *** * *  *    *

consensus_6263#1      CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 293
consensus_6263#2      CCTGCAATCCGGTTGAGAGATATACCTCACAAACAACGCAACAGCAATTGGCCACCATTG 475
consensus_6263#0      CGTGCG-TGCGTGTGTGTG-TTTGTCTGTCCGACGTTCTGATTCCTGCCTAGCCTCCTAG 330
                      * ***  * **  ** * * * *  **  *  **      *   *       *  * * *

consensus_6263#1      TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 352
consensus_6263#2      TGTAGTAATTAACCAGGCAGGAATAATCCTCGAGTAACACAGTAACAGCAAAGCGCG-GT 534
consensus_6263#0      CGAGGAGAGTGTGTGTGTGTGTGTGTGCGTGCGATCAAACAGTAGGCGAGGAGCGTGTGT 390
                       *  *  * *      *   *  *   * *    * * ******   *   **** * **

consensus_6263#1      -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 406
consensus_6263#2      -CAACAACGC-GTATCCTGAGACGAGTAAAAGAAGAGTATCAGGCGAGGAG-ACAC---C 588
consensus_6263#0      GCAACACTACCAGATAGGGAAAAAAGGAGAAGAAGAAACACACCCCAGCTCTACTCTTGC 450
                       *****   *   **   ** *  ** * *******    **  * **    ** *   *

consensus_6263#1      GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAGTCCCAAACCTCTGGCAGTGTCCCGGAG 466
consensus_6263#2      GGAGTCTGCGGCTGTCCGTAGTTGCTGCTCGAG--------------------------- 621
consensus_6263#0      AGAAGGTG-GGCGGCCCCCGGGGGAAGAGAGAGAGAGAGCGAATCAATAGCAACC-GGTA 508
                       **   ** *** * **   *  *  *   ***                           

consensus_6263#1      GGTTACACCGATCTTCACGAACAAGACACACGAAACATGAGCGTGTAAAGCCGGAAAGTG 526
consensus_6263#2      ------------------------------------------------------------
consensus_6263#0      GCTAGCTGCTGCTGTCAAACGCGAAGAAAAGCGGCCCTAAACGTGGTCATCCTTGATTTT 568
                                                                                  

consensus_6263#1      CGATTGGTAGTATGCGGCACATCGGATAGATAGCAAAACGCTAAAGGTGTGTTAATAACT 586
consensus_6263#2      ------------------------------------------------------------
consensus_6263#0      TGCCTTTTA-TTTTCGATTGTGAGACAGTGTGTGAGTGTGTGTGTAGTGTCCTGTGTCCT 627
                                                                                  

consensus_6263#1      GAAACTTGCAGTAAGAAACGGATTGAAGAAATAGCCGAAACTTCAATCAGAAACGTTCTC 646
consensus_6263#2      ------------------------------------------------------------
consensus_6263#0      GTGGCTTCTACCCTGGTAAACGGGGAAGCAGGGCCACAAATGTAACACTTCACTGCTTTG 687
                                                                                  

consensus_6263#1      AATCCACA---------------- 654
consensus_6263#2      ------------------------
consensus_6263#0      CAGCTTCTTNCTCCTGACGACGGG 711
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)