These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1479 fasta sequence [CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAACATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGTGAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGATGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAAAGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCTCGGTG-CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCG-AAAG-GTGCACGA-GCAGGTCGGCGCTACGCCATCAAGTGTCCGATGTGTGACAAAAAGTTCCGCTATCGGGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGACACATGAAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAATCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAACGCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT] [+] EMBL BM604552 [CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAACATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGTGAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGATGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAAAGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCTCGGTGCCCGGATCGAGTGAAGCGCGGCG ] [+] EMBL CNS08YH2 [ CTGCGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCAGCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACAGCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGGTGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAGAGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTTGGACGATGAGGAACGCCTGGCGGATGACGATACGAACTTGTTGTCCTCCGACGATAGTGACGATTCCTCGGTG CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCG AAAG GTGCACGA GCAGGTCGGCGCTACGCCATCAAGTGTCCGATGTGTGACAAAAAGTTCCGCTATCGGGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGACACATGAAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAATCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGA ] [+] EMBL CNS08NAW [ AACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGACGATTCCGCGGGG CCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAAAGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTGTGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTGAACAAGCACATGCGCAAAGCGTGCACGAGGCAGGTC ] [-] EMBL CNS08NAX [ aatttgtACCTCGAAGGATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCAAGAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAACGCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT] consensusID : consensus_6265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 869 fasta sequence [AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATGAAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAAACGCACCTGGCCAACGTGTGCACGGAGCGTTCGTTCCCGTGCCCGATCTGTGCGAAGCAGTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTACCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAAGCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTTTAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGTGCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA] [-] EMBL CNS08YH3 [AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAATCCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATGAAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCGTTCCCGTTCAAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGACCAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAATCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAACACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGTGGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAACATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAAACGCACCTGGCCAACGTGTGCACGGAGCGTTCGTTCCCGTGCCCGATCTGTGCGAAGCAGTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTACCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAAGCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTTTAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGTGCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6265#0 CCGCATTTTCTCGCTGCAATAGATATCGCCAGGTAACTGAATGTTACTGTTACTGTGAAC 60 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 ATAAATAAAACGACATAGGAGGACATTCCTCTTGCAGCCCGTGTTCGCCATGGCGTCAGT 120 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 GAAGGTGGAAAATAGTTCCAGGATCGTTGCCAACTCTCCACGGGATCATCCACGGTGCGA 180 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 TGTGTGTCTGCGCTGGGAAAGTGTTTGCTTCGGCAGATCGGATCCCATCTTCACTGGGAA 240 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 AGATGTGTTGGCCATGGTAACGCAGTATCTCGACATGAACATCACCCTAACACTCGTCTG 300 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 CGAACGCTGCTGGAGTAGATTGAAGGAGTTCGATGAGTTCTACCGGATGGTAAGCGAGCA 360 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 GCACACCAGCAAAGCGGATCTGCGGCCCCCAGACCGGAAGGAAGCTGACCCGGTCGAACA 420 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 GCGCGTGGAGGGAGTCGTTTATGGAATGGAATTTGTCGACATAAAGTACGAACCGCTGGG 480 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 TGAAGACGCGAATGTAACGATAAAAGAGGAGAAGGAGGAGGAAGCGGAGGAGCATGAGAG 540 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 AGAACCACTTCCGGACAGTGACGACTGTGACAAGCTGTTGCCCACCCAGTCGATGGAGTT 600 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 GGACGATGAGGAACGCCTGGCGGATGACGATACGAACTCGTTGTCCTCCGACGATAGTGA 660 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 CGATTCCTCGGTGCCGGATCGAGTGAAGCGCGGCGGCAAAGCATCGGCCATCGGCAAGAA 720 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 AGAGCCCAAGGTGGATAAGGAGATACTGGAGTTTTACCAGCGGCTGGTGTGCGAGATTTG 780 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 TGATGCGGACGGATGCTGGCCGGCGAACCGTCGATCGAGTACAGCAATCTGAGGGAGCTG 840 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 AACAAGCACATGCGAAAGGTGCACGAGCAGGTCGGCGCTACGCCATCAAGTGTCCGATGT 900 consensus_6265#1 ------------------------------------------------------------ consensus_6265#0 GTGACAAAAAGTTCCGCTATCG-GGCGAACTGGCTCGAGCATCGGGAGTTGTATCAGAAT 959 consensus_6265#1 --------AAGTTCCGCTTTCAAGGCGAAGCAACTCGAGCATCGGGACATGCATCAGAAT 52 ********** ** ****** ************** ** ******** consensus_6265#0 CCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGA-CACATG 1018 consensus_6265#1 CCGGACCGGTTCCGGTGCGTGGTGTGCGAGGAGGTGCACCAGAACATGGCGGAGCACATG 112 ***************************************************** ****** consensus_6265#0 AAGAACAAGCACCAGGAGCGCACTTACTGCTGCGAGGAGTGTGGCAAGCGGTTCCCGTTC 1078 consensus_6265#1 AAGAACAAGCACCAGGGGCGCACTAACTGCTGCGAGGAGTGTGGAAAGCG-TTCCCGTTC 171 **************** ******* ******************* ***** ********* consensus_6265#0 AAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGGATGTCGTCTGTGAC 1138 consensus_6265#1 AAGGCTCGGCTTACGGCGCACGTGAAGAAAATGCACACCTCGAAGAATGTCGTCTGTGAC 231 ********************************************* ************** consensus_6265#0 CAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACGAA 1198 consensus_6265#1 CAGTGTCAGAAAAGCTTCAGCAGATACACGATCGAGGACCACAAGCGGGCAGTTCACAAA 291 ********************************************************* ** consensus_6265#0 TCGCGCTACATCTGCGAACACTGTTCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAA 1258 consensus_6265#1 TCGCGCTACATCTGCGAACACTGTCCGCGCACGTTCAAGTCGCGTCTTGCCCTCACGCAA 351 ************************ *********************************** consensus_6265#0 CACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGT 1318 consensus_6265#1 CACATGGAGGAACACGTGGAGGGATTGCGGAAGACGGTTTCCGCCACCTGCGAAAAGTGT 411 ************************************************************ consensus_6265#0 GGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAA 1378 consensus_6265#1 GGCGTAGTGCTGCGGGACAAGTACACGCTGCAGACGCACATCAAGCGCATGCACACGGAA 471 ************************************************************ consensus_6265#0 CATCCGCCCGCCAGCTGCGGCACATGCGGGAGGGTGTTCAAGTCGAAGCACAATCTCAAC 1438 consensus_6265#1 CATCCGCCCGCCAGCTGCGGCACATGCGGGAAGGTGTTCAAGTCGAAGCACAATCTCAAA 531 ******************************* *************************** consensus_6265#0 GCGCCCCTGGCCAACGTGTGCACAAAAAAAAAAGTTCCCGT------------------- 1479 consensus_6265#1 ACGCACCTGGCCAACGTGTGCACGGAGCGTTC-GTTCCCGTGCCCGATCTGTGCGAAGCA 590 *** ****************** * ******** consensus_6265#0 ------------------------------------------------------------ consensus_6265#1 GTTTAAGAAGAAGATTAAACTGACCGAACACATGACGACGCACACGAAGAGTGTGCTGTA 650 consensus_6265#0 ------------------------------------------------------------ consensus_6265#1 CCAGTGTCCGTACTGTCCGAAGACGTTCAGCTTCGAGACGCAGCTGTACACGCACCGGAA 710 consensus_6265#0 ------------------------------------------------------------ consensus_6265#1 GCAGGCGCACTACGAGCAGTGGCTGGAGATGCAGCGGAAGCGCAAGGAGGGTGTACGGTT 770 consensus_6265#0 ------------------------------------------------------------ consensus_6265#1 TAAGGTTAACCGCATCACGGATATGCCCTCTACCTGAACCGAATGCGCGCGTATATGTGT 830 consensus_6265#0 --------------------------------------- consensus_6265#1 GCGTTTTTATGCTAGGAGTAGTAATACTGTAAAATAATA 869 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||