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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1216 fasta sequence
[AGTGAATGCAAAGAGTGAAAGCACATCTGCTTGTAGGGACAAACTAACCAACCACGGTCATAGTGTTAGAGCCACTCATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCTGTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCATCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGTGGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAATTCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCAGAGAGAGAGAGAGTGCTCGAAGTGAGACAGCAGAGCGAGGGAAGAAGACAAAATTAACGCGGATCGTCTCCATTATTGGTGTGATGGTAGAGGACATAATGGTAGTACATGGGCGAAAAATAATGTGCAAAATGCAAAAACAAACTTCTGAACTGGACTCTGGAATATGTGCATGCGCGTATGAGAGAATTATATATATAAATGTAGATATACATATGCATACCTATACACACACCCATACACACATTACTCAATACGCGATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAAGAGCGAGAGAGCGAAAA----AGAGAGAGAGATTTTCCGATTATTTTCGGTTGATCGTTTTATTGCCTTCTGGAAACTAAGTAGAAATATATGTTCCACCCAAATCAGCGGCGTGGGGAAGATGGTACGCGCACTGTGAAGAGATTAGTGAGGAAAAGAAATGAAAGATCATCAAATATTAGACCGATATGATGACCCCTATCAATGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAATAAGCTTGTTTATGCGTGTGTGTGTGTGCGTGCATTGAGAAAGTATTCATACTAGAGATGGCAAAGCATGATTTATAAAAGCACTGTCAATCCCCCCCGATAACAATTCAAATGCAAACTTTAGAACTTCATCTAAACAAACAAAAAAATGCTTTAACTCCAGCTGCTCGTTTGGCGAAAGGAATTGGTTTTGTTTTTTCAACATGCGCGCAGCATTGGCAGCAAACACAACTGTGCATGCATTTACACACCACCAAAGGGAAGTGCACGAATATACAACAGTGATGAAATGCAATGAAGT]
[+] EMBL BX617938 [AGTGAATGCAAAGAGTGAAAGCACATCTGCTTGTAGGGACAAACTAACCAACCACGGTCATAGTGTTAGAGCCACTCATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCTGTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCATCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGTGGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAATTCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCAGAGAGAGAGAGAGTGCTCGAAGTGAGACAGCAGAGCGAGGGAAGAAGACAAAATTAACGCGGATCGTCTCCATTATTGGTGTGATGGTAGAGGACATAATGGTAGTACATGGGCGAAAAATAATGTGCAAAATGCAAAAACAAACTTCTGAACTGGACTCTGGAATATGTGCATGCGCGTATGAGAGAATTATATATATAAATGTAGATATACATATGCATACCTATACACACACCCATACACACATTACTCAATACGCGATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAA ]
[+] EMBL BX611793 [ gGGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAATTCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCAGAGAGAGAGAGAGTGCTCGAAGTGAGACAGCAGAGCGAGGGAAGAAGACAAAATTAACGCGGATCGTCTCCATTATTGGTGTGATGGTAGAGGACATAATGGTAGTACATGGGCGAAAAATAATGTGCAAAATGCAAAAACAAACTTCTGAACTGGACTCTGGAATATGTGCATGCGCGTATGAGAGAATTATATATATAAATGTAGATATACATATGCATACCTATACACACACCCATACACACATTACTCAATACGCGATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAAGAGCGAGAGAGCGAAAA AGAGAGAGAGATTTTCCGATTATTTTCGGTTGATCGTTTTATTGCCTTCTGGAAACTAAGTAGAAATATATGTTCCACCCAAATCAGCGGCGTGGGGAAGATGGTACGCGCACTGTGAAGAGATTAGTGAGGAAAAGAAATGAAAGATCATCAAATATTAGACCGATATGATGACCCCTATCAATGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAATAAGCTTGTTTATGCGTGTGTGTGTGTGCGTGCATTGAGAAAGTATTCATACTAG ]
[+] EMBL BM652877 [ ccgAGAGGACATAATGGTAGTACATGGGCG AAAATAATGTGCAAAATGCAAACACAAACTTCTGAACTGGACTCTGGAATATGTGCATGCGCGTATGAGAGAATTATATATATAAATGTAGATATACATATGCATACCTATACACACACCCATACACACATTACTCAATACGCGATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAAGAGCGAGAGAGCGAAAAAGAGAGAGAGAGAGATTTTCCGATTATTTTCGGTTGATCGTTTTATTGCCTTCTGGAAACTAAGTAGAAATATATGTTCCACCCAAATCAGCGGCGTGGGGAAGATGGTACGCGCACTGTGAAGAGATTAGTGAGAAAAAGAAATGAAAGATCATCAAATATGAGACCGATATGATGACCCCTATCAAAGGTGTAAGGA ]
[-] EMBL BX611792 [ GATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAAGAGCGAGAGAGCGAAAA AGAGAGAGAGATTTTCCGATTATTTTCGGTTGATCGTTTTATTGCCTTCTGGAAACTAAGTAGAAATATATGTTCCACCCAAATCAGCGGCGTGGGGAAGATGGTACGCGCACTGTGAAGAGATTAGTGAGGAAAAGAAATGAAAGATCATCAAATATTAGACCGATATGATGACCCCTATCAATGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAATAAGCTTGTTTATGCGTGTGTGTGTGTGCGTGCATTGAGAAAGTATTCATACTAGAGATGGCAAAGCATGATTTATAAAAGCACTGTCAATCCCCCCCGATAACAATTCAAATGCAAACTTTAGAACTTCATCTAAACAAACAAAAAAATGCTTTAACTCCAGCTGCTCGTTTGGCGAAAGGAATTGGTTTTGTTTTTTCAACATGCGCGCAGCATTGGCAGCAAACACAACTGTGCATGCATTTACACACCACCAAAGGGAAGTGCACGAATATACAACAGTGATGAAATGCAATGAAGT]
consensusID : consensus_6270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AAACAACAACAACAACAAAAAACACAGCAAAAACAGCATTGCGAGTGAATGCAAAGAGTGAAAGCACACCTGCTTGTAGGGACAAACTAACTAACCACGGTCATAGTGTTAGAGCCACTCATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCTGTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCATCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGTGGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAATTCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCGCACTGTGAAGAGATTAGTGAGAAAAAGAAATGAAAGATCATCAAATATGAGACCGATATGATGACCCCTATCAAAGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAATAAGCTTGTTTATGCGTGTGTGTGTGTGTGTGCGTGCATTGAGAAAGTTTCATACTAGAGATGGCAAAGCATGATTTATAAAAGCACTGTAAAT]
[+] EMBL BX617695 [AAACAACAACAACAACAAAAAACACAGCAAAAACAGCATTGCGAGTGAATGCAAAGAGTGAAAGCACACCTGCTTGTAGGGACAAACTAACTAACCACGGTCATAGTGTTAGAGCCACTCATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCTGTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCATCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGTGGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAATTCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCGCACTGTGAAGAGATTAGTGAGAAAAAGAAATGAAAGATCATCAAATATGAGACCGATATGATGACCCCTATCAAAGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAATAAGCTTGTTTATGCGTGTGTGTGTGTGTGTGCGTGCATTGAGAAAGTTTCATACTAGAGATGGCAAAGCATGATTTATAAAAGCACTGTAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6270#0 -------------------------------------------AGTGAATGCAAAGAGTG 17
consensus_6270#1 AAACAACAACAACAACAAAAAACACAGCAAAAACAGCATTGCGAGTGAATGCAAAGAGTG 60
*****************
consensus_6270#0 AAAGCACATCTGCTTGTAGGGACAAACTAACCAACCACGGTCATAGTGTTAGAGCCACTC 77
consensus_6270#1 AAAGCACACCTGCTTGTAGGGACAAACTAACTAACCACGGTCATAGTGTTAGAGCCACTC 120
******** ********************** ****************************
consensus_6270#0 ATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCT 137
consensus_6270#1 ATGTGTCTATCTGAAGAGTGCACACACTTTCCAGCCACAGCTGCGTGAAGGTTGTATTCT 180
************************************************************
consensus_6270#0 GTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCA 197
consensus_6270#1 GTACTATTATTTATGAACTCGAAGTGCAGGGAAAGGGCAGGAGAGATGATATGTAAAGCA 240
************************************************************
consensus_6270#0 TCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGT 257
consensus_6270#1 TCTGTATTTATAGTCTCGAAACCACGCGTACGGAAACAAATCATGCATAACATATTCAGT 300
************************************************************
consensus_6270#0 GGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAAT 317
consensus_6270#1 GGTAGCGGGCATAATGTTATCATTCAACATTGTGAGGGCAAAATATGATTGGAAATCAAT 360
************************************************************
consensus_6270#0 TCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCAGAGAGAGAGAGA 377
consensus_6270#1 TCCAAAATTGGAAATGAAATCGATTCCCATACATAGCATAGATACGCGCACTGTGA-AGA 419
*********************************************** * * ** ***
consensus_6270#0 GTGCTCGAAGTGAGACAGCAGAGCGAGGGAAGAAGACAAAATTAACGCGGATCGTCTCCA 437
consensus_6270#1 GATTAGTGAGAAAAAGAAATGAAAGATCATCAAATATGAGACCGATATG-ATGACCCCTA 478
* ** * * * ** ** ** * * * * * ** * * *
consensus_6270#0 TTATTGGTGTGATGGTAGAGGACATAATGGTAGTACATGGGCGAAAAATAATGTGCAAAA 497
consensus_6270#1 TCAAAGGTGTAA----GGAAAGCAT--CGGT------CAAGTAAATAATTTTGCCCC--- 523
* * ***** * ** *** *** * ** *** ** *
consensus_6270#0 TGCAAAAACAAACTTCTGAACTGGACTCTGGAATATGTGCATGCGCGTAT-GAGAGAATT 556
consensus_6270#1 TGCAAA--TAAGCTTGT---TTATGCGTGTGTGTGTGTGTGTGCGTGCATTGAGAAAGTT 578
****** ** *** * * * * * **** **** * ** **** * **
consensus_6270#0 ATATATATAAATGTAGATATACATATGCATACCTATACACACACCCATACACACATTACT 616
consensus_6270#1 TCATAC-TAGAGATGGCAAAGCATG-----ATTTATAAAAGCACT-GTAAAT-------- 623
*** ** * * * * *** * **** * *** ** *
consensus_6270#0 CAATACGCGATGATGGAATACGGCAATGCCGTGCATAACATATGAGAGAAAGAGCGAGAG 676
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 AGCGAAAAAGAGAGAGAGATTTTCCGATTATTTTCGGTTGATCGTTTTATTGCCTTCTGG 736
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 AAACTAAGTAGAAATATATGTTCCACCCAAATCAGCGGCGTGGGGAAGATGGTACGCGCA 796
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 CTGTGAAGAGATTAGTGAGGAAAAGAAATGAAAGATCATCAAATATTAGACCGATATGAT 856
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 GACCCCTATCAATGGTGTAAGGAAAGCATCGGTCAAGTAAATAATTTTGCCCCTGCAAAT 916
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 AAGCTTGTTTATGCGTGTGTGTGTGTGCGTGCATTGAGAAAGTATTCATACTAGAGATGG 976
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 CAAAGCATGATTTATAAAAGCACTGTCAATCCCCCCCGATAACAATTCAAATGCAAACTT 1036
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 TAGAACTTCATCTAAACAAACAAAAAAATGCTTTAACTCCAGCTGCTCGTTTGGCGAAAG 1096
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 GAATTGGTTTTGTTTTTTCAACATGCGCGCAGCATTGGCAGCAAACACAACTGTGCATGC 1156
consensus_6270#1 ------------------------------------------------------------
consensus_6270#0 ATTTACACACCACCAAAGGGAAGTGCACGAATATACAACAGTGATGAAATGCAATGAAGT 1216
consensus_6270#1 ------------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||