cluster # 6276

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Anopheles gambiae
cluster # 6276 cluster # 6276 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6276#0 length = 686 sequences # 1

consensus_6276#1 length = 541 sequences # 3
consensus_6276#2 length = 465 sequences # 1

consensusID : consensus_6276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTCTGTGCGTATCAAAGGCGAAAGTGGACCCCGTGAAGGAGACCAAACACTAAACGAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCCGCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGAAAACGACAAGCGAAAACAATACGACG]

[+] EMBL BM642853             [CCGGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTCTGTGCGTATCAAAGGCGAAAGTGGACCCCGTGAAGGAGACCAAACACTAAACGAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCCGCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGAAAACGACAAGCGAAAACAATACGACG]




>consensus_6276#0
CCGGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGC
ACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAAT
CGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCAT
TTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAA
GTAACCAACACTGAAGCAGAAAAGCAAAAAAAACACAAATCCTTCCCTCAACATATCCCG
CGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTCTGTGCGTATCAA
AGGCGAAAGTGGACCCCGTGAAGGAGACCAAACACTAAACGAGTTTGCTTTCTCCTCCCA
CTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACA
ATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCAC
TGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCC
GCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGA
AAACGACAAGCGAAAACAATACGACG

consensusID : consensus_6276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 541
fasta sequence

                              [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGGCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCC]

[+] EMBL BM621539             [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGGCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCC]
[+] EMBL BM637480             [CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTG                                                                                                                                                                                                                                                         ]
[+] EMBL BM628133             [                                       ccgGGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAAGCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAGCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGC  AAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGT GCGTGTGTGTGTCTTGTCTCGCTCGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCAT TCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCACTGCAGGG                                    ]




>consensus_6276#1
CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCC
CGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTC
GCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAA
GTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATACAAAGGGAGCAG
CGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAA
AAGCAAAAAAAAAACACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCCGA
AGAAAGTGATCCGTGTGGCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCGGGC
GACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTATTGG
CCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATC
C

consensusID : consensus_6276#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [CCGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCAGCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAAACACAAATCCTTCCCGCCCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTGGACCCCGTGCTGTGAAGGAGACCAAACACTAAACCAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCG]

[+] EMBL BM634814             [CCGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCAGCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGAAAAGCAAAAAAAAAAACACAAATCCTTCCCGCCCAGTGGGTCCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTGGACCCCGTGCTGTGAAGGAGACCAAACACTAAACCAGTTTGCTTTCTCCTCCCACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCG]




>consensus_6276#2
CCGAAAAAGTTGAAATTCCCGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCAC
CCTTGCCGTGTAGTGTGTCGCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCT
GAAGCGTGTGCGTGTGAAAGTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTT
CCGCAAACCAAGGGGAGCAGCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAG
TAACCAACACTGAAGCAGAAAAGCAAAAAAAAAAACACAAATCCTTCCCGCCCAGTGGGT
CCTAGCCGAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGC
GAAAGTGGACCCCGTGCTGTGAAGGAGACCAAACACTAAACCAGTTTGCTTTCTCCTCCC
ACTTCCCTCCTACAGTGTCTCGCTCGGTGCAGTGATAAGCGGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6276#0      ---------------------------------------CCGGGAAAAAGTTGAAATTCC 21
consensus_6276#2      -----------------------------------------CCGAAAAAGTTGAAATTCC 19
consensus_6276#1      CCGATTTTGGTCGATTTGATTCATCATCGCCTTTTGGGTAGAGGAAAAAGTTGAAATTCC 60
                                                                 *****************

consensus_6276#0      CGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTC 81
consensus_6276#2      CGGAGCACATCACAACATTTTCGGGCCGCGAAATTATGCACCCTTGCCGTGTAGTGTGTC 79
consensus_6276#1      CGGAGCACATCACAACATTTTCGGGCCGCGAAATTAGGCACCCTTGCCGTGTAGTGTGTC 120
                      ************************************ ***********************

consensus_6276#0      GCTAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAA 141
consensus_6276#2      GCCAAGATTGAGCAAAGCGTTGTGCGAGTGCGAGAAAATCTGAAGCGTGTGCGTGTGAAA 139
consensus_6276#1      GCCAAGATTGAGCCAAGCGTTGTGCGAGTGCGAGAAAATCGGAAGCGTGTGCGTGTGAAA 180
                      ** ********** ************************** *******************

consensus_6276#0      GCAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATAC-AAAGGGAGCA 200
consensus_6276#2      GTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCAAACCAAGGGGAGCA 199
consensus_6276#1      GTAATTCTGTGCGAAACGGTAATTTACACTTTGCATCATTTCCGCATAC-AAAGGGAGCA 239
                      * ******************************************** ** ** *******

consensus_6276#0      GCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 260
consensus_6276#2      GCAAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 259
consensus_6276#1      GCGAAACGTCAATTTTGTGGAAACAAAAGAGGGCGAGAAAGTAACCAACACTGAAGCAGA 299
                      ** *********************************************************

consensus_6276#0      AAAGCAAAAAAAA---CACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCC 317
consensus_6276#2      AAAGCAAAAAAAAAAACACAAATCCTTCCC------------GCCCAGTGGGTCCTAGCC 307
consensus_6276#1      AAAGCAAAAAAAAAA-CACAAATCCTTCCCTCAACATATCCCGCGCAGTGGGTCCTAGCC 358
                      *************   **************            ** ***************

consensus_6276#0      GAAGAAAGTGATCCGTGTGCGTGTGTGTGT------CTGTGCGTATCAAAGGCGAAAGTG 371
consensus_6276#2      GAAGAAAGTGATCCGTGTGCGTGTGTGTGTGTGTGTTTGTGCGTATCGAAGGCGAAAGTG 367
consensus_6276#1      GAAGAAAGTGATCCGTGTG-GCGTGTGTGTGTCTTGTCGCTCTCGGTGCAGTGATAAGCG 417
                      ******************* * ********        *  *       **    *** *

consensus_6276#0      GACCCCGTG------AAGGAGACCAAACACTAAA----CGAGTTTGCTTTCTCCTCCCAC 421
consensus_6276#2      GACCCCGTGCT-GTGAAGGAGACCAAACACTAAA----CCAGTTTGCTTTCTCCTCCCAC 422
consensus_6276#1      GGCGACGCGAGAGCTGAACAATCCCCACACCCGAACCTCCATATCGGGGTCTGTGCTTAT 477
                      * *  ** *       *  *  **  ****   *    * *  * *   ***   *  * 

consensus_6276#0      TTCCCTCCTACAGTGTCTCGCT-CGGTGCAGTGATAAGCGGGCGACGCGAGAGCTGAACA 480
consensus_6276#2      TTCCCTCCTACAGTGTCTCGCT-CGGTGCAGTGATAAGCGGGCG---------------- 465
consensus_6276#1      TGGCCGTGGACGTCGTGGCACTGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCG 537
                      *  **    **   **  * ** * * * **  *       ***                

consensus_6276#0      ATCCCCACACCCGAACCTCCATTCGGGGTCTGTGCTTATTGGCCGTGGACGTCGTGGCAC 540
consensus_6276#2      ------------------------------------------------------------
consensus_6276#1      ATCC-------------------------------------------------------- 541
                                                                                  

consensus_6276#0      TGCAGGGAAGAAAAGGAACAGCGAACAACAGCGACAGCGATCCGCGGACCAGCAACATCC 600
consensus_6276#2      ------------------------------------------------------------
consensus_6276#1      ------------------------------------------------------------
                                                                                  

consensus_6276#0      GCCACGCTACAAACATGAGTCTGTTCGGAACGACGTCCACACTCAACGCCGATATAGAGA 660
consensus_6276#2      ------------------------------------------------------------
consensus_6276#1      ------------------------------------------------------------
                                                                                  

consensus_6276#0      AAACGACAAGCGAAAACAATACGACG 686
consensus_6276#2      --------------------------
consensus_6276#1      --------------------------