These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1047 fasta sequence [ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGATGTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGGCTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAA-GTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATCACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAG--ACCACACACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGC-CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA] [+] EMBL BX615877 [ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGATGTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGGCTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGAAAGGGTGGTGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAA GTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGAT ] [+] EMBL CNS08PGN [ CTCCTCCAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTCGAAAAACGTCGTCGCGCCGGCAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATCACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAG ACCACACACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGC CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA] [-] EMBL CNS08PGO [ AACGGCAAAGGTTCGCGCGTCGGAAAAATCCTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGAACAGCGAGGGCAAGGGTGGCGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGAGGGAGAAGGCGAATGCGGCCGCGTCGAAAAA GTCGTCGCGCCGGGAAGGACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCTCCCGTTTACCCTCCCAACACCACCACCCTTTACTATTACCTACTACAACAACCCCGTTTCATCACCGCACGATAACAATCATCCACTTTCCGTCGATCCATCCCAATCTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTTTGGGTAAATGCGCCGCAGGCACAAAAAACATAGACAGGCACTACATATACACAGACTCCGTAAAACCCATTCCAGTATAAGAGGACGGAGATGTGACGAAAGGGGAGGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAATCAGCCTCCCCAATGCACCACCTGGAAAATGAAGACAATTACGATTAAATTAAGCATAGGCCACAGCTAGGAAGCCACAGATACGCGTTTTTTTCTCTTATTTTCATAACATTTTTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTGCTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGCTCTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGA ] [-] EMBL CNS08OKR [ AAGATTTGCTAGTGGAGGAAATAGTGGGTGGGCGGTTAGAACGGCCGGC CTAGATTTGCGGACGAATTAAATGTATTCTAATAAACGATGAAAGC ] consensusID : consensus_6277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CGNGGTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAACACCACCTTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACAATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCACTACATATACAACAGACTCCGTAAAACCATTCCAGTATAACGAGGACGGACGACTGTGACGANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAATCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCANTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACCATANATAAAAGTAAGGAGATATGA] [+] EMBL AL694351 [CGNGGTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGATCGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAACACCACCTTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACAATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAGAACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCACTACATATACAACAGACTCCGTAAAACCATTCCAGTATAACGAGGACGGACGACTGTGACGANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAATCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCANTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACCATANATAAAAGTAAGGAGATATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6277#0 ACCATCGCCGGTGGTAGAGAAGCGCATGGTCGAGAAGGTGGTCACCTCCAAGCGAAAGAT 60 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 GTCCCCTCCGATGCACAAAGCATCCGCGGCCAAACACAGGCGACACTCGAGCAGCTCCGG 120 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 CTCCGGTTCGTCCGATTCGAGCGATTCCGGCTCGGAAAGCTCGTACTCCTCCAGCTCCTC 180 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 CAGCTCGTCGCGCGGCGCTGGCAAGGGAAGAACGGCAAAGGTTCGCGCGTCGGAAAAATC 240 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 CTCCAAATCAGCCAGCATGGGAAAGAAGGATTCAAAGAAGCACAGCGAGGGCAAGGGTGG 300 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 CGGTGCGCAGGTGATACCGCCCTCGAGTGCGGCGATGGAGAAGGCGAATGCGGCCGCGTC 360 consensus_6277#1 --------------------------------------------------------CGNG 4 ** consensus_6277#0 GAAAAAGTCGTCGCGCCGGGAAGAACTGCTGAAGCAGCTGCGAGCCGTCGAGGAAGCGAT 420 consensus_6277#1 GTTTNTTTTNTGNTGCCGGGAAGAACTGCTGAANTAGCTGCGAGCCGTCGAGGAAGCGAT 64 * * * ******************* ************************* consensus_6277#0 CGCCCGGAAGCGCACTAAGATATCATAAATCTCCTCT-CCCGTTTACCCTCCCAACACCA 479 consensus_6277#1 CGCCCGGAAGCGCACTAAGATATCATAAATCTCCTATACCCGTTTACCCTCCCAAA--CA 122 *********************************** * ***************** ** consensus_6277#0 CCACCCTTTACTATTACCTACTACAACAA-CCCCGTT--TCATCACC-GC-ACGATCACA 534 consensus_6277#1 CCACC-TTTACTATTACCTACTACAACAAACCCCGGTATTCATCACCTGCGACGATCACA 181 ***** *********************** ***** * ******** ** ********* consensus_6277#0 ATCATCCACTTT--CCGTCGATCCATCCC-AAT-CTCCCGCGAGCTACACGATAAGAAAG 590 consensus_6277#1 ATCATCCACTTATACCGTCGATCCATCNCCAATACTCCCGCGAGCTACACGATAAGAAAG 241 *********** ************* * *** ************************** consensus_6277#0 AACAGTTTGATGTTT--GGGTAAATGC-GCCGCAG--ACCACACACA-TAGA-CAGGCAC 643 consensus_6277#1 AACAGTTTGATGTATTAGGGTAAATGTTGCCGCAGGCACCACACACAATAGAACAGGCAC 301 ************* * ********* ******* ********** **** ******* consensus_6277#0 TACATATACA-CAGACTCCGTAAAACCCATTCCAGTATAA-GAGGACGGAGA--TGTGAC 699 consensus_6277#1 TACATATACAACAGACTCCGTAAAACC-ATTCCAGTATAACGAGGACGGACGACTGTGAC 360 ********** **************** ************ ********* ****** consensus_6277#0 GAAAGGGGA--GGAGGAACAGTGTCCCGTAAAATAAGGGAAGCGTTTCCCTTTCCCCTAA 757 consensus_6277#1 GANAGTGGGACGGAGGAACAGTGTCCCGTAAAGTCAAGGAAGCGTTTCCCTTTCCCCTAA 420 ** ** ** ********************* * * *********************** consensus_6277#0 TCAGCCTCCCCAATGCACCACCTGGAAAATGAACACAA--TTACGATTAAA--TTAAGCA 813 consensus_6277#1 TCAGCCCCCCAATGCCACCACTGGCAAAATGAACACACATTTACGATTNAACTTNAAGCA 480 ****** *** * ****** * ************ ******** ** * ***** consensus_6277#0 T-AGGCCACAGC-TAGGAAGCAACACCCCCGCGTTTTTTTCTCTTATTTTCATAACATTT 871 consensus_6277#1 NTATGGCACAGCGTAGGAAGCCAACCAGATACGCGTTAAACTCTCTATCTTANCATAACC 540 * * ****** ******** * * ** ** **** * * * * * consensus_6277#0 TTATGTTGTTTTTTTTTTTCTTTCTCTCCTATGACAATGTGTCCCACACATGAAGATTTG 931 consensus_6277#1 ATANATAAAAGTAAGGAGATATGA------------------------------------ 564 ** * * * consensus_6277#0 CTAGTGGAGGAACTAGTGGGTGGGCGGTTAGAACGGCCGGCCTAGATTTGCGGACGAATT 991 consensus_6277#1 ------------------------------------------------------------ consensus_6277#0 AAATGTATTCTAATAAACGATGAAAGCGACAGGATTTAAATGTAAAAAAATATAAA 1047 consensus_6277#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||