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Anopheles gambiae
cluster # 6278 cluster # 6278       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6278#0 length = 886 sequences # 4  
consensus_6278#1 length = 437 sequences # 1  

consensusID : consensus_6278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 886
fasta sequence
                              [CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]

[+] EMBL BM585337             [CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACT                                                                                                                                                                               ]
[+] EMBL BX629265             [                                    GATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]
[+] EMBL BX629158             [                                              ACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN]
[+] EMBL BX615715             [                                                                                                                                                                               GTGGAAATAATGCTCATCTGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGAGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGGGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTAGATGTAACTGGTACTTCTGTTACTGCTCAAGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGTATAATTATTTCCGA                                                                                                              ]


>consensus_6278#0 CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATT ATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTT TTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGA AATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCAT GATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCAT GATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCA CAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTC CCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGT GCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTAC GGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTT ACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGAC CATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACT GCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTT GACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAG TAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN



consensusID : consensus_6278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC]

[+] EMBL BX468542             [GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC]


>consensus_6278#1 GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACA AGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACC CGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCC CGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAA TGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAG AGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTG CATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAAC TCCAACCTGAAAGTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6278#0      CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATT 60
consensus_6278#1      ------------------------------------------------------------
                                                                                  

consensus_6278#0      ATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTT 120
consensus_6278#1      ------------------------------------------------------------
                                                                                  

consensus_6278#0      TTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGA 180
consensus_6278#1      ------------------------------------------------------------
                                                                                  

consensus_6278#0      AATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCAT 240
consensus_6278#1      ------------------------------------------------------------
                                                                                  

consensus_6278#0      GATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCAT 300
consensus_6278#1      ------------------------------------------------------------
                                                                                  

consensus_6278#0      GATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCA 360
consensus_6278#1      ----------------------GGCAAGA-ATTCGGCACGNTGTGGGAAATCAAGATAAT 37
                                             ***  * * **  **** **      *  *  **   

consensus_6278#0      CAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTC 420
consensus_6278#1      TTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCA 97
                        *   * *   **   *  *** * *  * ** **  *   ***   * **   *    

consensus_6278#0      CCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGT 480
consensus_6278#1      CCGGCC-CCGGCAGCAGACAGACCCGAAG--GGCAAGGTTCTCCGCCCCCACACTTAGAA 154
                      ** **    *  * * * * *  **** *    **   *           * * ****  

consensus_6278#0      GCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTAC 540
consensus_6278#1      GCGCGA-----------AGAGTACGTGCTGTAAGTC-----CCGCAGA-------CGAAC 191
                      **  *            * * *****   ** * **      **  **       ** **

consensus_6278#0      GGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTT 600
consensus_6278#1      AAAAT-CAACAGGTAGAACCCATAAGAAAT-----GACGAAAATAAT-CATAACAATGTG 244
                        ***   **     ****      **  *           **** * *** ***** * 

consensus_6278#0      ACCGGACTGGAAAGATTGTCTGTGCGAA-ATTATAAGCTTGTGACGGACATATCGTTGGA 659
consensus_6278#1      GATCGAC--AACACATTGTGCGTATTATTAATAGAGATTTGCTACTG-CAAGCGTAGAGA 301
                          ***   * * *****  **   *  * ** *   ***  ** * **        **

consensus_6278#0      CCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTAC 719
consensus_6278#1      GCATGTCGAATTAGAAAATCCTCC------ACTTTTACGTCGAGCTGGTGATCAAATCAA 355
                       *** ****** **     ** *       ******   *  * *****  *    * * 

consensus_6278#0      TGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNG-TAATTATTTCCGATT 778
consensus_6278#1      TGCTGCATATCAACATATTTTTGA---TGCTCGTGGAAATAATGCTCATCGGCCCC--CT 410
                      ****        **  *  **  *   * *****   *     * * **     **   *

consensus_6278#0      TTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCC 838
consensus_6278#1      GTGCTTGAACTCCAACCTGAAAGTTGC--------------------------------- 437
                       **    **    **  * ***  * *                                 

consensus_6278#0      AGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN 886
consensus_6278#1      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)