These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 886 fasta sequence [CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN] [+] EMBL BM585337 [CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACT ] [+] EMBL BX629265 [ GATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN] [+] EMBL BX629158 [ ACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTACTGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNGTAATTATTTCCGATTTTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCCAGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN] [+] EMBL BX615715 [ GTGGAAATAATGCTCATCTGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCATGATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCATGATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCACAACCGCAACGAGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTCCCTGCAATTGCTAACGGGCCGGGCCGGGGCTACCAGCATCAAGTATTTGTAAATTTAGGTGCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTACGGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTTACCGGACTGGAAAGATTGTCTGTGCGAAATTATAAGCTTGTGACGGACATATCGTTGGACCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTAGATGTAACTGGTACTTCTGTTACTGCTCAAGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGTATAATTATTTCCGA ] consensusID : consensus_6278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC] [+] EMBL BX468542 [GGCAAGAATTCGGCACGNTGTGGGAAATCAAGATAATTTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCACCGGCCCCGGCAGCAGACAGACCCGAAGGGCAAGGTTCTCCGCCCCCACACTTAGAAGCGCGAAGAGTACGTGCTGTAAGTCCCGCAGACGAACAAAATCAACAGGTAGAACCCATAAGAAATGACGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATTATTAATAGAGATTTGCTACTGCAAGCGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTTTTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGAAATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAAGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6278#0 CCGCCCACGCGTCCGGAAAATAATCATAACAATGTGGATCGACAACACATTGTGCGTATT 60 consensus_6278#1 ------------------------------------------------------------ consensus_6278#0 ATTAATAGAGATTTGCTACTGCAACGTAGAGAGCATGTCGAATTAGAAAATCCTCCACTT 120 consensus_6278#1 ------------------------------------------------------------ consensus_6278#0 TTACGTCGAGCTGGTGATCAAATCAATGCTGCATATCAACATATTTTTGATGCTCGTGGA 180 consensus_6278#1 ------------------------------------------------------------ consensus_6278#0 AATAATGCTCATCGGCCCCCTGTGCTTGAACTCCAACCTGAAATTGCAGCTCAAGCTCAT 240 consensus_6278#1 ------------------------------------------------------------ consensus_6278#0 GATGAAAACGGCCCAGTAGAACGCGAGCAACCTTTTTTGAATGTTCACTTGCGATTCCAT 300 consensus_6278#1 ------------------------------------------------------------ consensus_6278#0 GATGCAGCCAATAATGCTCCAGTGCAGAATAATCATCACGATGGTCAGGAAAATAATCCA 360 consensus_6278#1 ----------------------GGCAAGA-ATTCGGCACGNTGTGGGAAATCAAGATAAT 37 *** * * ** **** ** * * ** consensus_6278#0 CAACCGCAACGCGTCTTGCCACACGTAATTATTATGCCCGGAAATTTCCCAGAAAACTTC 420 consensus_6278#1 TTAATTCGAATTGTACGGGGACAAGCAGGTGTTTTGATCAATAATCAACGAGTTCAACCA 97 * * * ** * *** * * * ** ** * *** * ** * consensus_6278#0 CCTGCAATTGCTAACGGGCCGGGCCGAGGCTACCAGCATCAAGTATTTGTAAATTTAGGT 480 consensus_6278#1 CCGGCC-CCGGCAGCAGACAGACCCGAAG--GGCAAGGTTCTCCGCCCCCACACTTAGAA 154 ** ** * * * * * * **** * ** * * * **** consensus_6278#0 GCAGGGCAACCAGCTCCAAATTACGTATCGTTAATCAGTGATCGTGGAATATGTGCGTAC 540 consensus_6278#1 GCGCGA-----------AGAGTACGTGCTGTAAGTC-----CCGCAGA-------CGAAC 191 ** * * * ***** ** * ** ** ** ** ** consensus_6278#0 GGAATATCACGCAATGAACTTGCGGGAGGTTTTTTAGGAGGAATATTACATCACAATTTT 600 consensus_6278#1 AAAAT-CAACAGGTAGAACCCATAAGAAAT-----GACGAAAATAAT-CATAACAATGTG 244 *** ** **** ** * **** * *** ***** * consensus_6278#0 ACCGGACTGGAAAGATTGTCTGTGCGAA-ATTATAAGCTTGTGACGGACATATCGTTGGA 659 consensus_6278#1 GATCGAC--AACACATTGTGCGTATTATTAATAGAGATTTGCTACTG-CAAGCGTAGAGA 301 *** * * ***** ** * * ** * *** ** * ** ** consensus_6278#0 CCATCTCGAATCAGCTGCCCCACATTTGAAACTTTTGGATGTAACTGGTACTTCTGTTAC 719 consensus_6278#1 GCATGTCGAATTAGAAAATCCTCC------ACTTTTACGTCGAGCTGGTGATCAAATCAA 355 *** ****** ** ** * ****** * * ***** * * * consensus_6278#0 TGCTCAGGGCGTACGCAGCTTCAAGCTTTCTCGTCCCAGCTGNG-TAATTATTTCCGATT 778 consensus_6278#1 TGCTGCATATCAACATATTTTTGA---TGCTCGTGGAAATAATGCTCATCGGCCCC--CT 410 **** ** * ** * * ***** * * * ** ** * consensus_6278#0 TTGACCTAATGNNAATTTTAAAACTCCATGTAATACATTTTATAAATTACTAGCTGGGCC 838 consensus_6278#1 GTGCTTGAACTCCAACCTGAAAGTTGC--------------------------------- 437 ** ** ** * *** * * consensus_6278#0 AGTAACCTAGTTTTTCCCACATAGTATTAGTTGACGATAAGTATATGN 886 consensus_6278#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||