These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1367 fasta sequence [AACGGGAGTGCGAAAGCGCTTAATCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAG-TTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGC-GAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC-AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCAGCACCGGTGACGCTGGGGACATCGAAAATGACC] [+] EMBL CNS08LZI [AACGGGAGTGCGAAAGCGCTTAATCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAG TTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGC GAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACA ] [+] EMBL CNS08I6Z [ TCGGTTCCATTTTTATTTTCTGGTGCAGCTAATCTTTAATTACGTGTACAGATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGCTTTTTCCGCTACATGAGCGAAAGGTATCCTTGCTTAAGCGGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACC AACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTTTGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTAAAAAAATTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTTAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAAT ] [-] EMBL CNS08LZJ [ GACGGTGTGGCACCGCGCGCTAAAATGAACCAAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCAGCACCGGTGACGCTGGGGACATCGAAAATGACC] [-] EMBL CNS08I70 [ TGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATCCCCAGTGGTCACGTTTTTTTTGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCACGCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCGGATTTAATCATGCTTGGACTGTGAACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAAGTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTGCTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGGCTGCGGAACCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTGGTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCAACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCTGGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGGGATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAATAACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAGGACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGGAGACAATGCAGCACCG ] consensusID : consensus_6283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAATATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTTTTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGTATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTCCGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAA] [+] EMBL BM628289 [CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAATATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTTTTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGTATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTCCGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCCGAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAACGATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTACGTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGTGTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAGGCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCGTTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTGCAACACTTCATACAGGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6283#0 ------------------------------------------------------------ consensus_6283#1 CCGCCCACGCGTCCGGAGAATTTTTTGTAGCTAAAATCATTCTATTGTATTGTTAAAAAT 60 consensus_6283#0 -----------------------------------------AACGGGAG--TGCGAAAGC 17 consensus_6283#1 ATTTGTATGTAGGTGAAAACCTCGTTCGTGAGTCAGTTTTTAGTGATTTCTTGCAGTGTT 120 * * *** consensus_6283#0 GCTTAATCG--GTTCCATTTTTATTTTCTGG-TGCAGCTAATCTTTAATTACGTGTACAG 74 consensus_6283#1 TTTTAACCATAATATGATTTTTATCTGAAAAATGAGAACATAATCGGAATGGAAAAGCGT 180 **** * * ******** * ** * * * * * consensus_6283#0 ATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTC 134 consensus_6283#1 ATTTTAACGTACGTAGGCAAAGGTCTTGAAGAGCTCAAAATGGGAGTGCCAAAGTTTTTC 240 ************************************************************ consensus_6283#0 CGCTACATGAGCGAAAGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCC 194 consensus_6283#1 CGCTACATGAGCGAACGGTATCCTTGCTTAAGCGAGCTGCTGAGGGAAAACCAGGTGCCC 300 *************** ******************************************** consensus_6283#0 GAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAAC 254 consensus_6283#1 GAATTCGACAACTTGTATTTGGATATGAACGGAATCATACACAACTGCTCCCACCCGAAC 360 ************************************************************ consensus_6283#0 GATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTAC 314 consensus_6283#1 GATGCGGACGTGCACTTTCGGATTTCGGAGGAAATGATTTTTGAAGGCATCTTTCACTAC 420 ************************************************************ consensus_6283#0 GTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGT 374 consensus_6283#1 GTGGAGTATCTGTTCAAACTGATTCGACCGCAGCAAGTGTTCTTCATCGCTGTCGACGGT 480 ************************************************************ consensus_6283#0 GTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAG 434 consensus_6283#1 GTGGCACCGCGCGCTAAAATGAACCAACAGCGTGGACGTCGCTTCCGTTCGGCGGCTGAG 540 ************************************************************ consensus_6283#0 GCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCG 494 consensus_6283#1 GCTCAGGACCTGCTAGAAAAGGCTAAGGCGAAGGGAGAGGAGATCTCTTCGGAAAGCCCG 600 ************************************************************ consensus_6283#0 TTTGACAGCAACTGCATAACACCGGGAACTAGTTTTATGGTTAGGCTGCAGAATGCTCTG 554 consensus_6283#1 TTTGACAGCAACTGCATAACACCGGGGACTAGCTTTATGGTTAGGCTGCAGAATGCTCTG 660 ************************** ***** *************************** consensus_6283#0 CAACACTTCATACAGGTGAAAATAGCGACCGATCGTCTGTGGAAAGCTTGTACGGTCATC 614 consensus_6283#1 CAACACTTCATACAGGTGAA---------------------------------------- 680 ******************** consensus_6283#0 CTCAGTGGTCACGAGACGCCAGGCGAGGGAGAACACAAAATAATGGAGTACATCAGGCAC 674 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GCGAAGGCTCAGCCCGGGTTTAACCCAAACACGCGACACTGTCTGTATGGCTTGGACGCG 734 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GATTTAATCATGCTTGGACTGTGCACACACGAGCGCTACTTCTCGCTCCTAAGGGAAGAA 794 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GTCAAATTTGGCAAAAATGACAAAAAAACGTCAAATTTAAAAGAGATCCGGTTCTACTTG 854 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 CTTCATCTGACGCTACTTAGTGAATATCTTGAACTGGAATTCGCCAGCGTTCGCGATCGG 914 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 CTGCGGTTCCCGTTCGACATTCATAAGCTCATCGACGACTGGATACTGCTGGTGTATTTG 974 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GTGGGGAATGATTTCATTCCTCATATGCCACACCTGCACATCAACGAAAATGCGCTTCCA 1034 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 ACACTGTATGAAGCTTACATGGACGTATTGCCGAACATGGATGGCTACATAAACGAGGCT 1094 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GGCATATTGAACTTACCTCGGCTGCAAATGCTTATGAGACGGCTTGCTAATTTCGATCGG 1154 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GATATGTTTCTCGATCGCTACACCGACCTAAAGTATTTGGAGGGAAAGTGCGGCAAAAAT 1214 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 AACTTGGATGCTTTTGACGTCGACGCGAATGAGATAATCGGGGCGAGCGAGATGGACAAG 1274 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GACTTGATGGCACTGATTATGTCATCGGAAATGCTGGACTCCGAGGGAGAAGACAATGCA 1334 consensus_6283#1 ------------------------------------------------------------ consensus_6283#0 GCACCGGTGACGCTGGGGACATCGAAAATGACC 1367 consensus_6283#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||