These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1225 fasta sequence [CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGA-GAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAG-TTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAAC-GGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACTAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCA-TGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGTTGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCAATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAGAGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGTTCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAAAGATGAATAAAAAATAACAGAAAGA] [+] EMBL BM600907 [CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGACGAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAGCTTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAACGGGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACTAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTCAGTCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAATCTTCAAACACATACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTTGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATCGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCT ] [+] EMBL CNS08YP2 [ TCCGGGCGGAGA GAGCGAAATTGGGTGCGTGCGGGAAAACATGACCGAATTCAGCGGGAG TTCAGTCTGCAGGCGGGCGGTGCGGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACACGGCTGCCAAGGACCGGAAC GGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGCACGACCAAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCA TGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAA ] [-] EMBL CNS08YP3 [ GAGCGTCCGATTGCCACCATGAAACTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGCCTGTTCATGGTGCTGGCCATTGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCTGTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGAACTGGCCATCAGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGGGAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGTTGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCAATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAGAGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGTTCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAAAGATGAATAAAAAATAACAGAAAGA] consensusID : consensus_6285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [TNGCCCGAGGNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGC] [+] EMBL AL932588 [TNGCCCGAGGNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAACCAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGTCCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTTTTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATGCTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTCGTCCAGTCGC] [+] EMBL CNS08L94 [ TACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACCGGGCTCGACTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTCTGGCTGCTGACGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6285#0 CCGCTGCCCCCGGGGCTGGCCAACGGTACGTTCCAGTTCCGGGCGGAGAGAGCGAAATTG 60 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 GGTGCGTGCGGGAAAACATGACCGAGTTCAGCGGGAGTTCAGTCTGCAGGCGGGCGGTGC 120 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 GGTGAGCTACTTTATCAGCCGGAAGGGAGGCCGGAGCAGTCTGCTGGAGTACGCCGACAC 180 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 GGCTGCCAAGGACCGGAACGGCTGCCCCGGATGCGGCTGCTAGCGAACGTGCGGACGACT 240 consensus_6285#1 ---------------------------------------------------TNGCCCGAG 9 * * consensus_6285#0 AAGCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAAC 300 consensus_6285#1 GNNCAGATCTCGCTGCGGCACAACGGGAACGCGGACGTCGTGTACAACGTGGCGCTCAAC 69 ********************************************************* consensus_6285#0 CAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGT 360 consensus_6285#1 CAGTACGATCAGCTGACGTCGGTGACGGAGGGCGAGTACGGGGTGTACGTCGGGGAGCGT 129 ************************************************************ consensus_6285#0 CCGATTGCCACCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTT 420 consensus_6285#1 CCGATTGCCATCGTGAAGCTTAGCCCGGGCGGTGTCTACACGCTGATATTGGACGAGTTT 189 ********** ************************************************* consensus_6285#0 TTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATG 480 consensus_6285#1 TTGGAGAATGAGTTTAACCTTCAAACACACACGATCACCCCGTCCAACTCGGTGCACATG 249 ************************************************************ consensus_6285#0 CTGTGGCTAATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACC 540 consensus_6285#1 CTGTGGCTTATACCGCAGTACGTCGTCATAACGGCCGGCGAGGTCATGTTCTCCATCACC 309 ******** *************************************************** consensus_6285#0 GGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTC 600 consensus_6285#1 GGGCTCGAGTTTTCCTACTCCCAGGCGCCGGAAAGCATGAAGTCCGTCATCCAGGCGTTC 369 ************************************************************ consensus_6285#0 TGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTC 660 consensus_6285#1 TGGCTGCTGACGGTCGCGATCGGCAACATGCTGGTGGTGTTCATTGCCGAGGCCAAGTTC 429 ************************************************************ consensus_6285#0 GTCCAGTCGCAGTCGCTCGAGTTTTTCCTCTTTGCCGCGCTCATGTTCCTCGACATGGGC 720 consensus_6285#1 GTCCAGTCGC-------------------------------------------------- 439 ********** consensus_6285#0 CTGTTCATGGTGCTGGCCATGCGCTATCGCTACTCCGACACGACCGGCGGCGCATCGTCT 780 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 GTCGAATCGATTGAGGTGGAGCAGCAGGGCAAAAAGAAGCAGCACGATGCACTGGCCATC 840 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 AGTGACACGCTGTCGGAAAGGAGTGCCAAGAGTACAACGTACGCAAACGAAGCATACCGG 900 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 GAAGACTGAGCGAGAACGAAGAGGAGGAAGAACGAGGCGCAGTTTTTGAGAGCCATGTGT 960 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 TGTAAAATTGCATTGCCGTTTCTCTAGTGCATCCACGCCGGGGATTGTCTCCACAGGGCA 1020 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 ATTTCAGGTTCCAAGCGAGGTGAATGCACACTGAGACTGCTACTAACAACAGCGCGTCAG 1080 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 AGGTATTATGTTTGTTTCGTCGTTTAATGGCGTCATCCTGCTGTAAGTTAGGTTTATAGT 1140 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 TCTTTTTTTGTGTAAAAAATAGGTACTGTCTAAACTTGCTGTAATTATTTTTGTTTCAAA 1200 consensus_6285#1 ------------------------------------------------------------ consensus_6285#0 AGATGAATAAAAAATAACAGAAAGA 1225 consensus_6285#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||