These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 565 fasta sequence [CCGCCCACGCGTCCGCCCCCGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAATTACA--ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG] [+] EMBL BM647960 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAATTACA ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAta ] [+] EMBL BM619405 [ CCG GTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTTGAATTTCAGCACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGATGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGATGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG] [+] EMBL BM592172 [ ccgggacgGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTTGAATTTCAGCACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGATGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGATGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGC ] [+] EMBL BM601696 [ ccgATTTTCCAGAAAAAGTATCTCGAATTACA ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGG AAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG] consensusID : consensus_6289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TCGACCCACGCGTCCGGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG] [+] EMBL BM639766 [TCGACCCACGCGTCCGGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6289#0 CCGCCCACGCGTCCGCCCCCGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAA 60 consensus_6289#1 ------------------------------------------------------------ consensus_6289#0 TTACAACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGAT 120 consensus_6289#1 ------------------------------------------------------------ consensus_6289#0 GAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGG 180 consensus_6289#1 ---------------------------------------TCGACCCACGCGTCCG--GGG 19 ** *** * * * *** consensus_6289#0 GACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGC 240 consensus_6289#1 GATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGC 79 ** ******************************** ** ********************* consensus_6289#0 ATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTG 300 consensus_6289#1 ATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTG 139 ******************************************** *************** consensus_6289#0 CAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAG 360 consensus_6289#1 CAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAG 199 ***** ****************************************************** consensus_6289#0 ATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCC 420 consensus_6289#1 ATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCC 259 ***************************************** ****************** consensus_6289#0 GACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGA 480 consensus_6289#1 GACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGA 319 ******************************************************* **** consensus_6289#0 GTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGT 540 consensus_6289#1 GTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG----------------- 362 ********** ******************************** consensus_6289#0 CTTCTCTACACAGGCTGCAAACAGG 565 consensus_6289#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||