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Anopheles gambiae
cluster # 6292 cluster # 6292       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6292#0 length = 816 sequences # 3  
consensus_6292#1 length = 569 sequences # 1  
consensus_6292#2 length = 494 sequences # 1  

consensusID : consensus_6292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 816
fasta sequence
                              [CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTTTTACCTGTCATTACATATTTGCCGTCAAATCATCATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCATTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA]

[+] EMBL BM625156             [CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTTTTA                                                                                                                                 ]
[+] EMBL BM626883             [CCGCGGACGCGTGGG         CGAATGGTTAGTTCACACTCAAGAATACTTACAAAGTTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX605494             [                                                                                                                                                                                                                                                                       ACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGGTTTATATAGTTTCGATATTAGTGAATACAGAAGCCTCATGAGTCTTCAAGTGAATTATTACATGCATTGGCAAGATTCCTCCTTAGCCTGGGACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAGCCCGGACTGTTTGCTACACGAAGATGGAGGTATTTCTTGTTCGCCAGTCTGCAGAATCTCTGCAAAGTGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAAGAACTCGTAGATGAAGTTAACTTCTTACCTGTCATTACATATTTGCCGTCAAATCATCATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCATTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA]


>consensus_6292#0 CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAG TTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAAT ATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCA ATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGC AACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACT ACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAA GTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCC AACATTACTACACTAAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATT AACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGC GTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCGAC TACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATAAA GAACTCGTAGATGAAGTTAACTTTTTACCTGTCATTACATATTTGCCGTCAAATCATCAT TTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCATT CCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA



consensusID : consensus_6292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [CCGCCCACGCGTCCGATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACTACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGT]

[+] EMBL BM624057             [CCGCCCACGCGTCCGATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGCAACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACTACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAAGTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCGACTACTCACGCTGGCCGTTCAACACACTAGTTTGT]


>consensus_6292#1 CCGCCCACGCGTCCGATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAATATCA TGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCAATTA ATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGCAACG GATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACTACGT ATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAAGTAA ATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACA TTACTACACTGAATATCAACAACGATGAAATTTGGTCCCCTCAGTTTGAAAATATTAATT CAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTACGCGTAA ATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCGACTACT CACGCTGGCCGTTCAACACACTAGTTTGT



consensusID : consensus_6292#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence
                              [CCGCGAACGATTAGTTCACACAAAAGAATACATACATAGTTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAATAGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGCAATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTGTATGTATAACTTTATTTCATTCAAATCATTACTGTATTTTTTGTTGATTATTTTAATGTACCTTTTTGGCTGAAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAAT]

[+] EMBL BM621401             [CCGCGAACGATTAGTTCACACAAAAGAATACATACATAGTTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAATAGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGCAATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGTTTTATATAGTTTCGATATTGTATGTATAACTTTATTTCATTCAAATCATTACTGTATTTTTTGTTGATTATTTTAATGTACCTTTTTGGCTGAAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACATTACTACACTGAAT]


>consensus_6292#2 CCGCGAACGATTAGTTCACACAAAAGAATACATACATAGTTTGAATACGAGTATTTACAT TTTAACATACGTTCAGCAACACACAATTAAATGGCGAATAGCTTGTCATTTATTTATCTC CCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCAATTAATTGTGACAAAAAAAGA AACAATGTGCAATATACCATCAAACAACATTTGTTCTGCAATGGATATGATCCAAAGATA CGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACTACGTATGCGGTTTTATATAGT TTCGATATTGTATGTATAACTTTATTTCATTCAAATCATTACTGTATTTTTTGTTGATTA TTTTAATGTACCTTTTTGGCTGAAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGA ATTATTACATGTATTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCCAACA TTACTACACTGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6292#0      CCGCGGACGCGTGGGCTAGTGCTACGAATGGTTAGTTCACACTCAAGAATACTTACAAAG 60
consensus_6292#1      ------------------------------------------------------------
consensus_6292#2      ---------------------CCGCGAACGATTAGTTCACACAAAAGAATACATACATAG 39
                                                                                  

consensus_6292#0      TTTGAATACGAGCATTTACATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAAT 120
consensus_6292#1      ---CCGCCCACGCGTCCG-ATTTTAGCATTCGTCCAGCAACACATAATTAAATGGCGAAT 56
consensus_6292#2      TTTGAATACGAGTATTTACATTTTAACATACGTTCAGCAACACACAATTAAATGGCGAAT 99
                              *  *  *    ****** *** *** ********** ***************

consensus_6292#0      ATCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCA 180
consensus_6292#1      ATCATGTCATTTATTTATCTCCCGCTTCTAGGGGCATTTCTTTTCGATTCCGCAAGCTCA 116
consensus_6292#2      AGCTTGTCATTTATTTATCTCCCGCTTCTAGTGGCATTTCTTTTCGATTCCGCAAGCTCA 159
                      * * *************************** ****************************

consensus_6292#0      ATTAATTGTGACAAAAAAAGAGACAATGTACAATATACCATCAAACAACATTTGTTCTGC 240
consensus_6292#1      ATTAATTGTGACAAAAAAAGAGATAATGTACAATATACCATCAAACAACATTTGTTCTGC 176
consensus_6292#2      ATTAATTGTGACAAAAAAAGAAACAATGTGCAATATACCATCAAACAACATTTGTTCTGC 219
                      ********************* * ***** ******************************

consensus_6292#0      AACGGATATGATCCAAAGATACGACCGGCTAAAAGTGAATTTGAATCAATTAATATAACT 300
consensus_6292#1      AACGGATATGATCCAAAGATACGGCCGGCTAAAAGTGAATTTGACTCAATTAATATAACT 236
consensus_6292#2      AATGGATATGATCCAAAGATACGACCAGCTAAAAGTGAATTTGACTCAATCAATATAACT 279
                      ** ******************** ** ***************** ***** *********

consensus_6292#0      ACGTATGCGGTTTTATATAGTTTCGATATTAGTGAATACAGAAGCGTCATGAGTTTTCAA 360
consensus_6292#1      ACGTATGCAGTTTTATATAGTTTCGATATTAGTGAATATAGAAGCGTCATGAGTTTTCAA 296
consensus_6292#2      ACGTATGCGGTTTTATATAGTTTCGATATT-GTATGTATAA---CTTTAT-----TTCAT 330
                      ******** ********************* **   ** *    * * **     **** 

consensus_6292#0      GTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCC 420
consensus_6292#1      GTAAATTATTACATGCGTTGGCAAGATTCCTCCTTAGCCTGGAACGCATCGGACTGGTCC 356
consensus_6292#2      TCAAATCATTAC-TGTATTTT-----TTGTTGATTATTTT--AATGTACCTTTTTGGCTG 382
                        **** ***** **  **       **  *  ***   *  ** * * *    ***   

consensus_6292#0      AACATTACTACACTAAA-TATCAACAACGATGAAATTTGGTCCCCTCAGT-TTGAAAATA 478
consensus_6292#1      AACATTACTACACTGAA-TATCAACAACGATGAAATTTGGTCCCCTCAGT-TTGAAAATA 414
consensus_6292#2      AAAGAGTGAATACAGAAGCGTCATGAGTCTTCAAGTGAATTATTACATGTATTGGCAAGA 442
                      **       * **  **   ***  *    * ** *    *       ** ***  ** *

consensus_6292#0      TTAACTCAGACTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTAC 538
consensus_6292#1      TTAATTCAGATTATGAAGGACAACCATCTGTATCCTGTTTGAACCCGGACTGTTTGTTAC 474
consensus_6292#2      TTCCTCCTTAGCCTGGAACGCATCGGACTG-GTCCAACATTA--CTACACTGAAT----- 494
                      **    *  *   ** *   ** *   ***  ***    * *  *   ****  *     

consensus_6292#0      GCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCTAAATGCTCGTCCG 598
consensus_6292#1      GCGTAAATGGATATGTGTCTTGTTCGCCAGTTTGCAGAATTTCTGCAAAATGCTCGTCCG 534
consensus_6292#2      ------------------------------------------------------------
                                                                                  

consensus_6292#0      ACTACTCACGCTGGCCGTTCAACACACTAGTTTGTCGAATGTGGTTCACAAATCGAGATA 658
consensus_6292#1      ACTACTCACGCTGGCCGTTCAACACACTAGTTTGT------------------------- 569
consensus_6292#2      ------------------------------------------------------------
                                                                                  

consensus_6292#0      AAGAACTCGTAGATGAAGTTAACTTTTTACCTGTCATTACATATTTGCCGTCAAATCATC 718
consensus_6292#1      ------------------------------------------------------------
consensus_6292#2      ------------------------------------------------------------
                                                                                  

consensus_6292#0      ATTTACCTACAACTAAGTGGTGTGTTACCAGTGTTTCATCCAATAAAACACAGTTAAGCA 778
consensus_6292#1      ------------------------------------------------------------
consensus_6292#2      ------------------------------------------------------------
                                                                                  

consensus_6292#0      TTCCAGGAGCTACCAGCCGCACAGTTGAGGAGTTGGAA 816
consensus_6292#1      --------------------------------------
consensus_6292#2      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)