These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1513 fasta sequence [CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATATATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTGCAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCATCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTCGCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAAGGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTCGTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTCGCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGAAAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGATTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAAAATAAGAACATAT] [+] EMBL CNS08MIE [CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATATATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTGCAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCATCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTCGCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAAGGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTCGTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTCGCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGAAAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGATTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACG ] [-] EMBL CNS08MIF [ GTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAAAACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAAACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCTTCTGCTTCGGCAGGATCTACCTGCTCTATAACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTAACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTTTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAAAATAAGAACATAT] [+] EMBL BX602618 [ CGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCTCACTCACAGTTTATGTGC TTTTTTGCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTACTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGAT ] [+] EMBL BM654445 [ CCGAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCATCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAAAAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGTCGGAATACCGGGAAGGGCCAGCAAATCACCGATGGTGCAATAGACAGCAACATTT ] consensusID : consensus_6295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [CAGATCCCCCCGAGGTTCGAACATACTGTGGTTCGAGTATACGTTACGCGGNTACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCGATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAACACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATTATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTCTTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGGCTTCCGAGACTTATTAGTACACCACGCAGCCGGATC] [+] EMBL AL694433 [CAGATCCCCCCGAGGTTCGAACATACTGTGGTTCGAGTATACGTTACGCGGNTACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCGATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAACACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATTATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTCTTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGGCTTCCGAGACTTATTAGTACACCACGCAGCCGGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6295#0 CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATAT 60 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 ATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTG 120 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 CAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCA 180 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 TCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTC 240 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAA 300 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTC 360 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTC 420 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGA 480 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 AAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGA 540 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 TTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTT 600 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 CGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCT 660 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTC 720 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 GCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTT 780 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 TTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTA 840 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 ATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCG 900 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 CATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGA 960 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 TCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCC 1020 consensus_6295#1 ------------------------------------------------------------ consensus_6295#0 TCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGG 1080 consensus_6295#1 --------------------------------------------------------CAGA 4 * * consensus_6295#0 ACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGC-ACGAAGCG 1139 consensus_6295#1 TCCCCCCGA--GGTTCGAACATACTGTGGTTCGAGTATAC-GTTACGCGGNTACGAAGCG 61 * ** ** ************************* ********* ******** consensus_6295#0 CGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGA 1199 consensus_6295#1 CGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGA 121 ************************************************************ consensus_6295#0 CGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATG-GACAC 1258 consensus_6295#1 CGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACAC 181 ****************************************************** ***** consensus_6295#0 TCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGC 1318 consensus_6295#1 TCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGC 241 ****************** ***************************************** consensus_6295#0 AAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATG 1378 consensus_6295#1 AAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATG 301 ************************************************************ consensus_6295#0 TGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGC 1438 consensus_6295#1 TGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGC 361 ************************************************************ consensus_6295#0 ATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATA 1498 consensus_6295#1 ATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATA 421 ************************************************************ consensus_6295#0 AAAA-TAAGAACATAT-------------------------------------------- 1513 consensus_6295#1 AANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCG 481 ** * ********** consensus_6295#0 ------------------------------------------------------------ consensus_6295#1 ATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAA 541 consensus_6295#0 ------------------------------------------------------------ consensus_6295#1 CACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATT 601 consensus_6295#0 ------------------------------------------------------------ consensus_6295#1 ATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTC 661 consensus_6295#0 ------------------------------------------------------------ consensus_6295#1 TTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGG 721 consensus_6295#0 ------------------------------------ consensus_6295#1 CTTCCGAGACTTATTAGTACACCACGCAGCCGGATC 757 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||