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Anopheles gambiae
cluster # 6298 cluster # 6298       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6298#0 length = 956 sequences # 3  
consensus_6298#1 length = 612 sequences # 1  
consensus_6298#2 length = 609 sequences # 1  

consensusID : consensus_6298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 956
fasta sequence
                              [GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT-CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC]

[+] EMBL BX625161             [GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAAGCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCTTTCGGCATCTCGACAGAGCCCACGAACATCCTCGGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTCGGATCGATGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTG                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX623323             [                                                                                                                                                                              CGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATCCCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGTGGGAGT CCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAACCCGCTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCGACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAATTTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC]
[+] EMBL BX619967             [                                                                                                                                                                                                                                                                                                                                                                    ggnTGGGAGTCCCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTCGACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCG                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_6298#0 GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGG TAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAA GCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGG ACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGGGTCTTGCCTACAATGGCTACGG ACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCCCCATCCCAGCCAACTCCCATATC CCCAAAAACCCACCAAAACAACCAGTCGCGGGCTGCTCGTTGTCAGCCGGTGCCACTGGT GGGAGTCCGGTTAGAAACAAACGGTTAGAAGCAAGTGCAACCTGGGTCCTTCGGCATCTC GACAGCGCTCACGAACATCCTCAGCCAAATCACCCCATTAATCTCACCCTCAGTGGATCG GCGCTTGGATCGGTGTAATGCAGAAGGAACCAGCCCTGTTCCATTCGACCCGCTTTCAAA CCCACTCCTCCACCCGCAACGGCCCCAGCGCAGCAAGCACCGAACTCGCACTCAATACCG ACTGACGAACTGATACCCCGCCGGTAGGGCATCGTTCTATCACGCCGCGTCATATGGAAT TTGCATGCAAAACGTCGTCTACAAAAACCGCGAAGCGAACATTACACACAGCCAAAAAAT GGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACATCTCGTAA TCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGATGGGCACA CCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNGNCCACCGC ACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACAGAAC



consensusID : consensus_6298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC]

[+] EMBL AL932746             [GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCCCACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTGCTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAAGGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGACCGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATGACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAACAGAAATGGTTC]


>consensus_6298#1 GGCCATAGTTGTCGTNTCCGGTGGACACGGTGGCGGCTGGGGACGTATCGGATCTGGCCA GTGGTCTTGCCTACAATGGCTACGGACACTACGCCCAGTAAGCGCAGTATACCTTGATCC CACCCATCCCAGCAAATACCCATATCCCCAAAAACCCACCAAAACAACAGTCGCGGGCTG CTCGTTGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCN ATTTGCANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCA AATCAACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCAGAA GGAACGCAGCCCTGTTCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGAC CGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAATACCGACATG ACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAATA NGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCAA CAGAAATGGTTC



consensusID : consensus_6298#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence
                              [CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG]

[+] EMBL AL696621             [CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGACGTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAAGAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGTTAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG]


>consensus_6298#2 CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGGACTGAGGTC GCGGAGGATTGCGGTGGCTTCGGAGGTGCCGGAGGCGGTGGCTTCGGAGGCGGCAAGGAC AAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAGCACTCTCGTC CCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGTGTCCAAGCTC GCCCTCGCCCTCGCCTCGATCATTGGCCATCAAGAAGCTGATCTCGAGGCTGGCAGCGGA CACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGGACACGGTGGCCGTGCTGGGGAC GTATCGGGATCTGGCCAGTGTCTTGCCTACAAATGGCTACGGACACTATGCCCAGTAAGC GCAGTATACCTTGATCCCCNCGCATCCCAGCAATCCCATATCCCAAAAACCAGCCAAAAA GAACCAGTACGCAGGGCTGACTCAGTTGTCAAGCCGGTGCCAACTGGTGGGAGTCCCGGT TAGAAACCAAAACGGTTAGAANGCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAG GCGCTCACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6298#0      GCTCCTGCTCGGCAGCACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGG 60
consensus_6298#1      ------------------------------------------------------------
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      TAAGGCTCTGATCGTGTCCAAGCTCGCCCTCGCCCTCGCCTCGATCATTGTTATCAAGAA 120
consensus_6298#1      ------------------------------------------------------------
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      GCTGATCTCGAGCGGCAGCGGACACCACGAATCGGCCCATGAGGTGGTCGTCTCCGGTGG 180
consensus_6298#1      ----------------------------------GGCCAT--AGTTGTCGTNTCCGGTGG 24
consensus_6298#2      ---------CCTATGCTCAGGCAGAATTGCCAGAGGTGTNAGAAATCAAGCGCTCCATGG 51
                                                        *              *    *  ***

consensus_6298#0      AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAG-GGTCTTGCCTACAATGG 234
consensus_6298#1      AC-ACGGTGGCGG----CTGGGGACGTATCGGATCTGGCCAGTGGTCTTGCCTACAATGG 79
consensus_6298#2      ACTGAGGTCGCGGAGGATTGCGGTGGCTTCGGAGGTG-CCGGAGGCGGTGGCTTCGGAGG 110
                      **   *** ****     ** **  *  *****  ** ** * **   ** ** *   **

consensus_6298#0      CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCC-CCCATCCCAGCCAA 290
consensus_6298#1      CTACGGACACTACGCCCAGTA-AGCG--CAGTATACCTTGATCCCACCCATCCCAGCAAA 136
consensus_6298#2      CGGCAAGGACAAGGACAAGAAGAACGGCCACTGGATCATGATCCCGCTCCTGCTCGGCAG 170
                      *  *    ** * * * ** * * **  ** *  * * ******* * * * *  *  * 

consensus_6298#0      CTCCCATATCCC---------CAAAAACC-CACCAAAACAACCAGTCGCGGGCTGCTCGT 340
consensus_6298#1      TACCCATATCCC---------CAAAAACC-CACCAAAACAAC-AGTCGCGGGCTGCTCGT 185
consensus_6298#2      CACTCTCGTCCCGCTCGCCTTCGGTGCCCTCGCCCTGCTCGCCGGTAAGGCTCTGATCGT 230
                        * *   ****         *     ** * **       *  **   *  *** ****

consensus_6298#0      TGTCAGCC-GGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCAAGT--G 397
consensus_6298#1      TGTCAGCCTGGTGCCACTGGTGGGAGTCCGGTTAGAAACAAACGGTTAGAAGCCNATTTG 245
consensus_6298#2      GTCCAAGC--TCGCCCTCGCCCTCGCCTCGATCATTGGCCATCA---AGAAGCTGATC-T 284
                         **  *    ***   *         ** * *    * * *    ******   *   

consensus_6298#0      CAAC-CTGG-GTCCTTC-GGCATCTCGACAGC-GCTCAC-GAACATCCTCAGCCAAATCA 452
consensus_6298#1      CANCACTGGTGTCCTTCTGGCATCTCGACAGCTGCTCACTGAACATCCTCAGCCAAATCA 305
consensus_6298#2      CGAGGCTGG----CAGCGGACACCACGA-ATCGGCCCATGAGGTGGTCGTCTCCGG-TGG 338
                      *    ****    *  * * ** * *** * * ** **         *    **   *  

consensus_6298#0      CCCCATTAATCTCACC-CTCAG-TGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 507
consensus_6298#1      ACCCATTAATCTCACCGCTCAGATGGATCGGCGCTTGGATCGGTGTAATGCA---GAAGG 362
consensus_6298#2      ACACGGTGGCCGTGCT--GGGGACGTATCGGGATCTGG-CCAGTGTCTTGCCTACAAATG 395
                       * *  *   *   *      *  * *****    ***  * ****  ***     ** *

consensus_6298#0      AAC-CAGCC-CTGT-TCCATT---CGACCC--GCTTTCAAACCC---ACTCCTCC--ACC 554
consensus_6298#1      AACGCAGCC-CTGT-TCCAGTATACGACGCCGGNTTTCAAACCNCGAGNTCCTACCAGAC 420
consensus_6298#2      GCTACGGACACTATGCCCAGTAAGCGCAGTATACCTTGATCCCCNCGCATCCCAGC-AAT 454
                          * * * ** *  *** *   **         ** *  **      ***        

consensus_6298#0      CGCAA---CGGCCCCAGCGCAGC--AAGCACCGAACTC---GCACTCAA-T-ACCGAC-T 603
consensus_6298#1      CGCAAACGTGGCCCAGNCGCAGACAANGCACCGAANCTACGGCACTCNAAT-ACCGACAT 479
consensus_6298#2      CCCA----TATCCCAAAAACCAGCCAAAAA--GAACCAGT-ACGCAGGGCTGACTCAGTT 507
                      * **       ***     *     *   *  ***       * *     * **  *  *

consensus_6298#0      GACGAACTGATACCCCGCCGGTAGGGC-ATCGT-TCTATCACGCCGCGTC-ATATGGAAT 660
consensus_6298#1      GACGAACTGATACCCCGCCGGTAGGGCGATCGTATCTATCACGCCGGGTCGATATGGAAT 539
consensus_6298#2      GTCAAGCCGGTGCCA-ACTGGTGGGA--GTCCCGGTTAGAA-ACCAAAACGGT-TAGAAN 562
                      * * * * * * **   * *** **    **     **  *  **    *  * * *** 

consensus_6298#0      TTGCA-TGCAAAACGTCGTCTACAAAAACCG-CGA--AGCGAACATTACAC-ACAGCCAA 715
consensus_6298#1      ANGCNATGCCAAACGTCGTCTACCANAACCGACGACAGGCGAACNTTACACCACAGGGCA 599
consensus_6298#2      GCACAGTGCAACCTGGTGTCCTTCGGCATCTCCGACAGGCGCTCACG------------- 609
                         *  *** *   *  ***       * *  ***   ***  *                

consensus_6298#0      A---AAATGGTTCCTGCTGAACCCTCACTCACACAATCATTCCCCAATCTCTCTCACACA 772
consensus_6298#1      ACAGAAATGGTTC----------------------------------------------- 612
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      TCTCGTAATCCCCCAATAACCAGACAGGGGGCCCACCGTTCCCCGATCGGAACATATCGA 832
consensus_6298#1      ------------------------------------------------------------
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      TGGGCACACCAGCTTTAGCTCTTAGCGGTCGAGGCGGCTCCCGTTTTTGCCGGAGCGCNG 892
consensus_6298#1      ------------------------------------------------------------
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      NCCACCGCACAGCAGTTTATTTATTTAACTTAATTTAATTTATTGNACTGCTCCTCAACA 952
consensus_6298#1      ------------------------------------------------------------
consensus_6298#2      ------------------------------------------------------------
                                                                                  

consensus_6298#0      GAAC 956
consensus_6298#1      ----
consensus_6298#2      ----
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)