These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 762 fasta sequence [TCAGTTGCAGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGGGAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF533512 [TCAGTTGCAGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGTTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGGGAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM587563 [ ccgGTCGAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGTCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCACGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCATGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAACGTGAACGAGAACTGCAACAAGCTGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGTGTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGC ] [+] EMBL BM654527 [ ccgCGAGTAGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCACGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCTAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGC ] [+] EMBL BM630546 [ TGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGAGCTTCTAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCT ] consensusID : consensus_6305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAG] [+] EMBL AL696649 [GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCAGTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGATAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCGAATGTTGCCCCAAGCCCATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAAGAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAATGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCATGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGTGCTTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6305#0 --------TCAGTTGCAGTCG-AGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCA 51 consensus_6305#1 GCAAGAATTCGCCAGAGGTTNTAGTGGAGCGATGGGACAGCGACAGCGTGTTGTGGTGCA 60 ** * ** ************************************** consensus_6305#0 GTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGA 111 consensus_6305#1 GTTGGCACTGTGTTTCCTCACTTTCGGGGCCCTGCTCCAGGCCGGGGTGCTGGCGGGCGA 120 ************************************************************ consensus_6305#0 TAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGCCGAATGTTGCCCCAAGCC 171 consensus_6305#1 TAATCCGTGTGCTGCCGGTCCACCTGTCGATACGAACCCGGC-GAATGTTGCCCCAAGCC 179 ****************************************** ***************** consensus_6305#0 CATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAA 231 consensus_6305#1 CATGCTGGTGGACGGTACGATCATGATGGACTGCTACAAGAAGTACGGCGAGCAGACGAA 239 ************************************************************ consensus_6305#0 GAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAA 291 consensus_6305#1 GAAACAGCTCCAGATGGATGGCATTCCCAGGGGTTGTTGCATTGCTGAGTGTGCGATGAA 299 ************************************************************ consensus_6305#0 TGCGACCAACATGTACGCGGACGGTATGCTGAAGCGGGACGATCTGTCGAAGA-TGTTCA 350 consensus_6305#1 TGCGACCAACATGTACGCTGACGGTATGCTGAAGCGGGACGATCTGTCGAAGAATGTTCA 359 ****************** ********************************** ****** consensus_6305#0 TGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGT 410 consensus_6305#1 TGGACGCGGTCAAGGACAAGCCGGAGTGGATGTCGCTGGTGCGCGATGCCACCAACGCGT 419 ************************************************************ consensus_6305#0 GCTTCGAGCTGGCGGAAAAGAAGATGGACGAGATCGAGGCGGGCGCCAAGCTGGAACCGA 470 consensus_6305#1 GCTTCGAG---------------------------------------------------- 427 ******** consensus_6305#0 GCTTCGAGGGCGAGAAGATCTGCCATCCCATCTCCGGCACGATTCTGCGCTGCATGGGCA 530 consensus_6305#1 ------------------------------------------------------------ consensus_6305#0 TGATGATGTTCGCCCAGTGTCCGGCGTCCGTTTTTAATGTGAACGAGAACTGCAACAAGC 590 consensus_6305#1 ------------------------------------------------------------ consensus_6305#0 TGCGGGAGTATGGCAGCATCTGTCCAATGATTTAGAGCAGTGCACTGTACATGTTTGTGT 650 consensus_6305#1 ------------------------------------------------------------ consensus_6305#0 GTGATTGGGGTCTTGGTTGTGAAAAACGGCAAACGTTGCATAGCTGGTGTAGCGATAGGG 710 consensus_6305#1 ------------------------------------------------------------ consensus_6305#0 GAAAATGAATCATAAATTATGTGCAAACACCTAAAAAAAAAAAAAAAAAAAA 762 consensus_6305#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||