These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence [CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG---G-GTGTGTGTATGTGTGTGTAATT-GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGT-AGGTATGGATTGGGATAATGAGAAGCGTGTAAGGATGAAATAGAAGAAGCGATGTCCTTCTTGGCTCTTGTATCTCCTTCTCCATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATCTATGCAAATATTACTATTACTACTATTACTACTACTACTATAACTCTACCTGCCCTCTTTCCCTAAATGATATATTTAACAAGAAAGACGACGGTTAAGATCGGTG] [+] EMBL BM616983 [CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG G GTGTGTGTATGTGTGTGTAATTGGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGGGTCTGTGTGTGT AGGTATGGATTGG ] [+] EMBL BM648875 [ ccgAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAGAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG G GTGTGTGTATGTGTGTGTAATT GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAAGGTA ] [+] EMBL BM623175 [ ccGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTTTTAAGACAGAGGGTCCCGTTTGTGTGTGTGTGTGTGTGTGTGTGTAATT GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGT AGGTATGGATTGGGATAATGAGAAGCGTGTAAGGATGAAATAGAAGAAGCGATGTCCTTCTTGGCTCTTGTATCTCCTTCTCCATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATCTATGCAAATATTACTATTACTACTATTACTACTACTACTATAACTCTACCTGCCCTCTTTCCCTAAATGATATATTTAACAAGAAAGACGACGGTTAAGATCGGTG] consensusID : consensus_6315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence [AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTTATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTAAGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTGTGGTGTGTGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGCGTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATCCCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAATGACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGCTAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCNATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACANCGGACAG] [+] EMBL AL931063 [AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTTATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTAAGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTGTGGTGTGTGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGCGTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATCCCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAATGACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGCTAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCNATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACANCGGACAG] consensusID : consensus_6315#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCCCGGAGTTANATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCAATTTCACAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTANGGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAAAAGATAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTATGGATT] [+] EMBL AL692649 [CCCCGGAGTTANATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCAATTTCACAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTANGGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAAAAGATAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTATGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6315#0 CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAG 60 consensus_6315#2 ------------------------------------CCCCGGAGTTANATGCTGAAAAAG 24 consensus_6315#1 ------------------------------------------------------------ consensus_6315#0 CATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAAT 120 consensus_6315#2 CATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAAT 84 consensus_6315#1 ------------------------------------------------------------ consensus_6315#0 GAAAGAGAGAGAAGG-AGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 179 consensus_6315#2 GAAAGAGAGAGAAGG-AGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 143 consensus_6315#1 --AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 58 ** * ** * ******************************************** consensus_6315#0 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCG-CCAACATGCTTT 238 consensus_6315#2 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCG-CCAACATGCTTT 202 consensus_6315#1 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTT 118 *********************************************** ************ consensus_6315#0 ATCATCT--CTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 296 consensus_6315#2 ATCATCT--CTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 260 consensus_6315#1 ATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 178 ***** *************************************************** consensus_6315#0 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCG-AGGTACAATTACTA 355 consensus_6315#2 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTA 320 consensus_6315#1 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTA 238 ********************************************* ************* consensus_6315#0 AGTGTCCA-GAGCAGCCACAACAACGAGTGGCGAA-GAAGAAAACAAATGTCCTTTGTGC 413 consensus_6315#2 AGTGTCCA-GAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGC 379 consensus_6315#1 AGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGC 298 ******** *********************** * ************************ consensus_6315#0 AGAGAAGGA-AACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACA-AAGCAAC-A 470 consensus_6315#2 AGAGAAGGA-AACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCA 438 consensus_6315#1 AGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACA-AAGCAAC-A 356 ********* ********* ****************************** ******* * consensus_6315#0 ATTTAA--AGGAACGGAAAGATTTGA-TGAGAGGACTGTTAAGAGAGAGGGTCCCGTT-T 526 consensus_6315#2 ATTTCACAAGGAACGGAAAGATTTGA-TGAGAGGACTGTTAAGAGAGAGGGTCCCGTTAN 497 consensus_6315#1 ATTTAA--AGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG 414 **** * ****************** ******************************* consensus_6315#0 GGGTGTG-TGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGA 585 consensus_6315#2 GGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAA-AAGA 556 consensus_6315#1 TGGTGTG-TGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGA 473 ****** *********************************************** **** consensus_6315#0 CAACTACTGTCTGA-TGGTGTGTCTGTGTGTGTAGGTA-TGGATTGGGATAATGAGAAGC 643 consensus_6315#2 TAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTA-TGGATT--------------- 600 consensus_6315#1 CAACTACTGTCTGA-TGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGC 532 ************* *********************** ***** consensus_6315#0 GTGTAAGGATGAAATAGAAGAAGC--GATGTCCTTCTTGGCT-CTTGTATCTCCTTC-TC 699 consensus_6315#2 ------------------------------------------------------------ consensus_6315#1 GTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATC 592 consensus_6315#0 CATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATC-TATGCAAATATT 758 consensus_6315#2 ------------------------------------------------------------ consensus_6315#1 CCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAAT 652 consensus_6315#0 ACTAT----TACTACTATTACTACTACTACTATAACTCTA---CCTGCCCTCTTTCCC-- 809 consensus_6315#2 ------------------------------------------------------------ consensus_6315#1 GACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGC 712 consensus_6315#0 TAAATGATATAT-TTAACAAGAAAGACGACGGTTAAGATCGGTG---------------- 852 consensus_6315#2 ------------------------------------------------------------ consensus_6315#1 TAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCN 772 consensus_6315#0 ------------------------------------------------------------ consensus_6315#2 ------------------------------------------------------------ consensus_6315#1 ATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACAN 832 consensus_6315#0 ------- consensus_6315#2 ------- consensus_6315#1 CGGACAG 839 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||