These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1224 fasta sequence [CCGGAAATTGAAAAAGGTGATATACAGTGAAGCGACGTGGAACGTCTTATCAGTGAAGCAATAACGAGGTCTCCTTCCCGCTCCAGATTGCAGAGAACAGAGCGGCTAGTTACTTCCGTCATCGTAGCTTGATTGTGTGCATAAGGTTTTTTGTTTTCCTGCGCGACACGGTGCATTAGCAGATCGAAGAGCCAGGATATTAAAAGTGTAGAAATCATCCTTTTCAAAGCTGGCTGGTAGACGCATAAGGTTTTGTGCTGTTTTGTTTTTTAACAGACTCATCTGTGTGTTATTTTTCTTCTGCATATGGTGTTTGTAGGTGTTAACCGCGATAATAGTATTTCTTGTACTGTAACCACGTATTTAAAGAAGTGAGCGCAAAAAGCATATCTATTACGAACAGCTCGTATTTAGCTGCATGTCGTCAAGTGTTACCGATAAAAATTATGACCGTTTGTGTATTCGTGTAGTGTTGGTAGCTTCTCATATCATCCATTCCTGTAAAATTGGTTGATAATTCTTCCTATCCTTCGACTAAGAAGAGAAGCCGAAAAAGAAACGGGAGAGTGTCATTGTTACAGTATAAGGTATTTGCATAGTGCAGTTTCTGGATGTGTGCGTGTGTGTAATATAAGTTTTACTCCTGTACCAAACAGTGATCCAGTTTCAGTATAGGAAAAAAATAATTATCTGTTTGTAGCAGTGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTATCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCTAGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATCAACATGCGTGAATTCAAAGTCGTCGTCCTGGGTTCCGGAGGGAGTGGGAAAGTCGGCCCTCACGGTGCAGTTCGTTTCAGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTTCTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTAGACACAGCGGGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTATCGTCATGTATTCGCTAACCAACCAC] [+] EMBL BM608791 [CCGGAAATTGAAAAAGGTGATATACAGTGAAGCGACGTGGAACGTCTTATCAGTGAAGCAATAACGAGGTCTCCTTCCCGCTCCAGATTGCAGAGAACAGAGCGGCTAGTTACTTCCGTCATCGTAGCTTGATTGTGTGCATAAGGTTTTTTGTTTTCCTGCGCGACACGGTGCATTAGCAGATCGAAGAGCCAGGATATTAAAAGTGTAGAAATCATCCTTTTCAAAGCTGGCTGGTAGACGCATAAGGTTTTGTGCTGTTTTGTTTTTTAACAGACTCATCTGTGTGTTATTTTTCTTCTGCATATGGTGTTTGTAGGTGTTAACCGCGATAATAGTATTTCTTGTACTGTAACCACGTATTTAAAGAAGTGAGCGCAAAAAGCATATCTATTACGAACAGCTCGTATTTAGCTGCATGTCGTCAAGTGTTACCGATAAAAATTATGACCGTTTGTGTATTCGTGTAGTGTTGGTAGCTTCTCATATCATCCATTCCTGTAAAATTGGTTGATAATTCTTCCTATCCTTCGACTAAGAAGAGAAGCCGAAAAAGAAACGGGAGAGTGTCATTGTTACAGTATAAGGTATTTGCATAGTGCAGTTTCTGGATGTGTGCGTGTGTGTAATATAAGTTTTACTCCTGTACCAAACAGTGATCCAGTTTCAGTATAGG AAAAAATAATTATCTGGTT ] [+] EMBL BM632982 [ CCGGTAAAATTGGTTGATAATTCTTCCTATCCTTCGACTAAGAAGAGAAGCCGAAAAAGAAACGGGAGAGTGTCATTGTTACAGTATAAGGTATTTGCATAGTGCAGTTTCTGGATGTGTGCGTGTGTGTAATATAAGTTTTACTCCTGTACCAAACAGTGATCCAGTTTCAGTATAGGAAAAAAATAATTATCTGTTTGTAGCAGTGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTATCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCTAGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATCAACATGCGTGAATTCAAAGTCGTCGTCCTGGGTTCCGGAGGGAGTGGGAAAGTCGGCCCTCACGGTGCAGTTCGTTTCAGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTTCTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTAGACACAGCGGGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTATCGTCAT ] [+] EMBL BM617143 [ ccgAAACAGTGATCCAGTTTCAGTATAGGAAAAAAATAATTATCTGTTTGTAGCAGTGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTATCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCTAGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATCAACATGCGTGAATTCAAAGTCGTCGTCCTGGGTTCCGGA GGAGTGGGAAAGTCGGCCCTCACGGTGCAGTTCGTTTCAGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTTCTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTAGACACAGC GGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTATCGTCATGTATTCGCTAACCAACCAC] consensusID : consensus_6317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [ATCGGCCGAGGGNTTAAAAATATTATCTGTTTGTAGCACTGGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTATCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCTAGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATCAACATGCGTGAATTCAAAGTTGTCGTCCTGGGTTCCGGAGGAGTGGGAAAGTCGGCCCTCACGGTGCAGTTCGTTTCGGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTTCTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTGGACACAGCGGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTATCGTCATGTATTCGCTAACCAACCACCAGACATTTCAGGATATTGCGAGTATGAGAAATGTGATCAGTCGTGTGAAAAGGTAGTCAGCCAGCACCAATCCTCCTAGTCGCCAATAAGCTAGATTTAGATTGCCAAAGAGAAGTGTCCACGGGCCGAAA] [+] EMBL BX466314 [ATCGGCCGAGGGNTTAAAAATATTATCTGTTTGTAGCACTGGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTATCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCTAGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATCAACATGCGTGAATTCAAAGTTGTCGTCCTGGGTTCCGGAGGAGTGGGAAAGTCGGCCCTCACGGTGCAGTTCGTTTCGGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTTCTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTGGACACAGCGGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTATCGTCATGTATTCGCTAACCAACCACCAGACATTTCAGGATATTGCGAGTATGAGAAATGTGATCAGTCGTGTGAAAAGGTAGTCAGCCAGCACCAATCCTCCTAGTCGCCAATAAGCTAGATTTAGATTGCCAAAGAGAAGTGTCCACGGGCCGAAA] consensusID : consensus_6317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [CCGATTTCGTTGAAGGAGGTGTCTGTGCTGCTCGCGCTCCTGCCGTAAAGTGATTTTCTGCCTAGCTAGTGGTTTCCATCTGATAGATGTACCCTTTTGCGGGGAAATATCGAGAAGTGCTGGTTTGCTGCGAGAAGCGAGCTGATCCAGTTTCAGTATAGGAAAAAAATAATTATCTGTTTGTAGCAGTGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGA] [+] EMBL BM592549 [CCGATTTCGTTGAAGGAGGTGTCTGTGCTGCTCGCGCTCCTGCCGTAAAGTGATTTTCTGCCTAGCTAGTGGTTTCCATCTGATAGATGTACCCTTTTGCGGGGAAATATCGAGAAGTGCTGGTTTGCTGCGAGAAGCGAGCTGATCCAGTTTCAGTATAGGAAAAAAATAATTATCTGTTTGTAGCAGTGTCTACCAATTTGTGTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAAATATTCCTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6317#0 CCGGAAATTGAAAAAGGTGATATACAGTGAAGCGACGTGGAACGTCTTATCAGTGAAGCA 60 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 ATAACGAGGTCTCCTTCCCGCTCCAGATTGCAGAGAACAGAGCGGCTAGTTACTTCCGTC 120 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 ATCGTAGCTTGATTGTGTGCATAAGGTTTTTTGTTTTCCTGCGCGACACGGTGCATTAGC 180 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 AGATCGAAGAGCCAGGATATTAAAAGTGTAGAAATCATCCTTTTCAAAGCTGGCTGGTAG 240 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 ACGCATAAGGTTTTGTGCTGTTTTGTTTTTTAACAGACTCATCTGTGTGTTATTTTTCTT 300 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 CTGCATATGGTGTTTGTAGGTGTTAACCGCGATAATAGTATTTCTTGTACTGTAACCACG 360 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 TATTTAAAGAAGTGAGCGCAAAAAGCATATCTATTACGAACAGCTCGTATTTAGCTGCAT 420 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 GTCGTCAAGTGTTACCGATAAAAATTATGACCGTTTGTGTATTCGTGTAGTGTTGGTAGC 480 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 TTCTCATATCATCCATTCCTGTAAAATTGGTTGATAATTCTTCCTATCCTTCGACTAAGA 540 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 --------------------------------CCGATTTCGTTGAAGGAGGTGTCTGTGC 28 consensus_6317#0 AGAGAAGCCGAAAAAGAAACGGGAGAGTGTCATTGTTACAGTATAAGGTATTTGCATAGT 600 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 TGCTCGCGCTCCTGCCGTAAAGTGATTTTCTGCCTAGCTAGTGGTTTCCATCTGATAGAT 88 consensus_6317#0 GCAGTTTCTGGATGTGTGCGTGTGTGTAATATAAGTTTTACTCCTGTACCAAACAGTGAT 660 consensus_6317#1 ------------------------------------------------------------ consensus_6317#2 GTACCCTTTTGCGGGGAAATATCGAGAAGTGCTGGTTTGCTGCGAGAAGCGAGC--TGAT 146 consensus_6317#0 CCAGTTTCAGTATAGGAAAAAAATA-ATTATCTGTTTGTAGCAGTG-TCTACCAATTTGT 718 consensus_6317#1 -----ATCGGCCGAGGGNTTAAAAATATTATCTGTTTGTAGCACTGGTCTACCAATTTGT 55 consensus_6317#2 CCAGTTTCAGTATAGGAAAAAAATA-ATTATCTGTTTGTAGCAGTG-TCTACCAATTTGT 204 ** * *** *** * ***************** ** ************* consensus_6317#0 GTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAA 778 consensus_6317#1 GTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAA 115 consensus_6317#2 GTGCAAAATTGTTGCTGTTCCGTGCTACCAGTAAAAGGAGTGTTTGGAGAAATGATCTAA 264 ************************************************************ consensus_6317#0 ATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTA 838 consensus_6317#1 ATATTCCTGTGAGGATTAAGTGAGTGTTTTGATCCTTTCATTCGGGACAAAAAGTGTGTA 175 consensus_6317#2 ATATTCCTGTGA------------------------------------------------ 276 ************ consensus_6317#0 TCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCT 898 consensus_6317#1 TCTGCATCGGAAGAAGTTGTGCATACATCATCTGTAAGTGCAACGCGGATAAAACCAGCT 235 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 AGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATC 958 consensus_6317#1 AGTTCACTTTTCCTATTTCTGGAGTGGTTCAGAGTTTGAATAGGAATTCATCAATTAATC 295 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 AACATGCGTGAATTCAAAGTCGTCGTCCTGGGTTCCGGAGGGAGTGGGAAAGTCGGCCCT 1018 consensus_6317#1 AACATGCGTGAATTCAAAGTTGTCGTCCTGGGTTCCGGAGG-AGTGGGAAAGTCGGCCCT 354 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 CACGGTGCAGTTCGTTTCAGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTT 1078 consensus_6317#1 CACGGTGCAGTTCGTTTCGGGTTGCTTCATAGAAAAATATGACCCTACTATTGAGGATTT 414 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 CTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTAGACACAGC 1138 consensus_6317#1 CTATCGAAAAGAGATTGAGGTGGACAACTCTCCTTGCGTGTTGGAAATTTTGGACACAGC 474 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 GGGGAACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTA 1198 consensus_6317#1 GGG-AACCGAACAGTTCGCTTCGATGCGGGACTTATATATAAAAAACGGGCATGGCTTTA 533 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 TCGTCATGTATTCGCTAACCAACCAC---------------------------------- 1224 consensus_6317#1 TCGTCATGTATTCGCTAACCAACCACCAGACATTTCAGGATATTGCGAGTATGAGAAATG 593 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 ------------------------------------------------------------ consensus_6317#1 TGATCAGTCGTGTGAAAAGGTAGTCAGCCAGCACCAATCCTCCTAGTCGCCAATAAGCTA 653 consensus_6317#2 ------------------------------------------------------------ consensus_6317#0 -------------------------------------- consensus_6317#1 GATTTAGATTGCCAAAGAGAAGTGTCCACGGGCCGAAA 691 consensus_6317#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||