These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1086 fasta sequence [CATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCTTCAAGACTGTTATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC] [+] EMBL CNS09OAL [CATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCTTCAAGACTGTTATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTA ] [+] EMBL AGA281888 [ TTATCCATAAAGCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAA ] [-] EMBL CNS09OAK [ CGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGCGTGATTCGGTCACGGTTGGTCTTCGAGAGAGATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATCAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC] consensusID : consensus_6319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCCCGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGTTGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAAGACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAATAAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCGTACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCTATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATGGCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGGATGATGCGTCCACGTGCCGATCTG] [-] EMBL BX469810 [AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCCCGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGTTGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAAGACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAATAAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCGTACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCTATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATGGCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGGATGATGCGTCCACGTGCCGATCTG] consensusID : consensus_6319#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [CACTCTTGTATGTTCATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGGACGCCCACGCGTCCGCGG] [-] EMBL BM587113 [CACTCTTGTATGTTCATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGGACGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6319#0 ------------------------------------------------------------ consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCC 60 consensus_6319#0 --------------CATCGT---TCGATTTTATTGGACAATTGTTAACC----TACCACT 39 consensus_6319#2 CACTCTTGTATGTTCATCGT---TCGATTTTATTGGACAATTGTTAACC----TACCACT 53 consensus_6319#1 CGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGT 120 * * * **** * * ** * * * * * consensus_6319#0 TATTTCCTTATCCATAAAGCCCCC-TTCAAGACTGTTATTCAGTAGGAATACACGC-TAA 97 consensus_6319#2 TATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGC-TAA 112 consensus_6319#1 TGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAA 180 * ** ** * * * * * ** ** * * * * *** consensus_6319#0 GAT-TAATAACCG-------GAAATCCATAATTATAATTCAT-GCATACAACACAAAAAC 148 consensus_6319#2 GAT-TAATAACCG-------GAAATCCATAATTATAATTCAT-GCATACAACACAAAAAC 163 consensus_6319#1 GACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAAT 240 ** **** *** *** * * * * * * **** * * ** ** consensus_6319#0 AAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGT--- 205 consensus_6319#2 AAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGG--- 220 consensus_6319#1 AAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGC 300 ** ** ** * * * ** *** * * * * * * * consensus_6319#0 -ACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATG 264 consensus_6319#2 -ACGCCC---ACGCGTCCGCGG-------------------------------------- 238 consensus_6319#1 GGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGAC 360 * * * * consensus_6319#0 GTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCA 324 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 GGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCT 420 consensus_6319#0 CAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGC 384 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 GTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAG 480 consensus_6319#0 CTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATG 444 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 CACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCG 540 consensus_6319#0 GTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATC 504 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 TACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCT 600 consensus_6319#0 TCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTAC 564 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATG 660 consensus_6319#0 AGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAAC 624 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 GCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGG 720 consensus_6319#0 GGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAG 684 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ATGATGCGTCCACGTGCCGATCTG------------------------------------ 744 consensus_6319#0 TTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTG 744 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAG 804 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 AATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCG 864 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGA 924 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCC 984 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAA 1044 consensus_6319#2 ------------------------------------------------------------ consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC 1086 consensus_6319#2 ------------------------------------------ consensus_6319#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||