These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1413 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTGATAAGCGTGATTACGGGAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGAATATCGAAATAACTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCGAAGTGAGTGTGAATTTATTCTCGAAAAAAGCGAAACGTCGAAATCGAAAGCAGCGCACACACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTTGCAGAGTGTGTAACAAATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGAAGAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGCAATGTGTGCGAACGTGTCGTGTGTTGTGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCACCGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGGCC------CAGCAGCAGCAGCACCGGGCCACCCAACACCTGCCAGCGCGAGTCGCCGCCCGAACTGGATACAACCACCACCTCCAACGGCAGCCCGTGATGGCGCGGGCGTACTTCTTTCCGGGAGGTGGCCCGGTGCGGTCCTACACCCAGGCCGCCTCGACCCTCACCCGGGAGCAGCTGCACGATCTGGTGTACAGGTTAAACGAAGATGAAAGAGAATTGCTCATGAACACGCTCAAGCAATTCGAATCCAACAAAGTGAAGGCAAAGTTTGAAGGGCAGTTGGCAGCAACCGTTTGGCGAAGTAGATTCGGCCGTCCAGCAAAGCTAAAGCCGGTCCTGGGTGATGTAGATCCGACCGGTTCCTACTGCGCGGTGCCGGAAGATTGGCTGCAAAAGAAGTTCGCCGAAACAGTGCCAGTACCACCGACTTCGGACCTCATGAAACTTGGATTGGTGAACGCCCTCCCATTCATTGGATTTGGTTTCCTTGACAACTTTACCATGATCATTGCGGGCGATTACATCGAGCACACGCTCGGGCTGTTCATGTGCATATCGACGATGGCGGCGGCAGCACTGGGGAACACCATCAGCGACGTAATCGGCATCGGGTCCGCCTTCTACGTGGAGAAGCTGGCCGAAATGAGTGGCGTGAAGCCGCCGAAGATGTCGCCGATCCAGCTGGAGATGAAAGCCAGCCGAAGGGCGGCCAATTTGGGACGAGTGCTGGGTATTACCATCGGATGTCTGCTGGGAATGTGCCCTCTATTATTCATGAAGGAGGATAAGGAGAAGGAAAAGGACAAGGATAAGAACAAGCCGTCGGAAGCAAGTGCGACTGATGCTGCTGCTGCTGCTGCGGATGGTGTTGCGAACATTGTTGCCGTGAA] [+] EMBL BM605292 [CCGCCCACGCGTCCGCCCACGCGTCCGTGATAAGCGTGATTACGGGAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGAATATCGAAATAACTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCGAAGTGAGTGTGAATTTATTCTCGAAAAAAGCGAAACGTCGAAATCGAAAGCAGCGCACACACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTTGCAGAGTGTGTAACAAATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGAAGAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGCAATGTGTGCGAACGTGTCGTGTGTTGTGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCACCGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGGCC CAGCAGCAGCAGCACCGGGCCACCCAACACCTGCCAGCGCGAGTCGCCGCCCGAACTGGATACA ] [+] EMBL BM612427 [ ccgGTGATTACGGGAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGAATATCGAAATAACTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCGAAGTGAGTGTGAATTTATTCACGAAAAAAGCGAAACGTCGAAATCGAAAGCAGCGCACACACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTTGCAGAGTGTGTAACAAATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGAAGAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGCAATGTGTGCGAACGTGTCGTGTGTTGTGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCACCGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGGCCCAGCAGCAGCAGCAGCAGCACCGGGTCACCCAACACCAGCCAGCGCGAGTCGTCGCCCGAACTGGATACAACCACCACCTCCAACGGCAGCCCGTGATGGCGCGGGCGTACTTCTTTCCGGGAGGTGGCCCGGTGCGGTCCTACACCCAGGCCGCCTCGACCCTCACCCGGGAGCAGCTGCACGATCTG ] [+] EMBL BX622851 [ ACTTCTTTCCGGGAGGTGGCCCGGTGCGGTCCTACACCCAGGCCGCCTCGACCCTCACCCGGGAGCAGCTGCACGATCTGGTGTACAGGTTAAACGAAGATGAAAGAGAATTGCTCATGAACACGCTCAAGCAATTCGAATCCAACAAAGTGAAGGCAAAGTTTGAAGGGCAGTTGGCAGCAACCGTTTGGCGAAGTAGATTCGGCCGTCCAGCAAAGCTAAAGCCGGTCCTGGGTGATGTAGATCCGACCGGTTCCTACTGCGCGGTGCCGGAAGATTGGCTGCAAAAGAAGTTCGCCGAAACAGTGCCAGTACCACCGACTTCGGACCTCATGAAACTTGGATTGGTGAACGCCCTCCCATTCATTGGATTTGGTTTCCTTGACAACTTTACCATGATCATTGCGGGCGATTACATCGAGCACACGCTCGGGCTGTTCATGTGCATATCGACGATGGCGGCGGCAGCACTGGGGAACACCATCAGCGACGTAATCGGCATCGGGTCCGCCTTCTACGTGGAGAAGCTGGCCGAAATGAGTGGCGTGAAGCCGCCGAAGATGTCGCCGATCCAGCTGGAGATGAAAGCCAGCCGAAGGGCGGCCAATTTGGGACGAGTGCTGGGTATTACCATCGGATGTCTGCTGGGAATGTGCCCTCTAT ] [+] EMBL BX621992 [ GCAGTTGGCAGCAACCGTTTGGCGAAGTAGATTCGGCCGTCCAGCAAAGCTAAAGCCGGTCCTGGGTGATGTAGATCCGACCGGTTCCTACTGCGCGGTGCCGGAAGATTGGCTGCAAAAGAAGTTCGCCGAAACAGTGCCAGTACCACCGACTTCGGACCTCATGAAACTTGGATTGGTGAACGCCCTCCCATTCATTGGATTTGGTTTCCTTGACAACTTTACCATGATCATTGCGGGCGATTACATCGAGCACACGCTCGGGCTGTTCATGTGCATATCGACGATGGCGGCGGCAGCACTGGGGAACACCATCAGCGACGTAATCGGCATCGGGTCCGCCTTCTACGTGGAGAAGCTGGCCGAAATGAGTGGCGTGAAGCCGCCGAAGATGTCGCCGATCCAGCTGGAGATGAAAGCCAGCCGAAGGGCGGCCAATTTGGGACGAGTGCTGGGTATTACCATCGGATGTCTGCTGGGAATGTGCCCTCTATTATTCATGAAGGAGGATAAGGAGAAGGAAAAGGACAAGGATAAGAACAAGCCGTCGGAAGCAAGTGCGACTGATGCTGCTGCTGCTGCTGCGGATGGTGTTGCGAACATTGTTGCCGTGAA] consensusID : consensus_6321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGAGCGCACGCACGCCAGTTCCGCTGCAGTTTTCGGGGGGTGATAAGCGTGATTACGGGAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGGATATCGAAATACCTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCGAAGTGAGTGTGAATTTATTCACGAAAAGCGAAACGTCGAAATCGAAAGCAGCAGCACACACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTGGCAGAGTGTGTAACAAATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGGAGAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGGAATGTGTGCGAACGTGTCGTGTGTTGTGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCACCGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGGCCCAGCAGCAGCAGCACCGGATCACCCAACACCAGCCAGCGCGAGTCGCCGCCCGAAATGGATACAACCACCACCTCCAACGGCAGCCCGTCATGGCGCGGGCGTACTTCTT] [+] EMBL BM586300 [CCGAGCGCACGCACGCCAGTTCCGCTGCAGTTTTCGGGGGGTGATAAGCGTGATTACGGGAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGGATATCGAAATACCTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCGAAGTGAGTGTGAATTTATTCACGAAAAGCGAAACGTCGAAATCGAAAGCAGCAGCACACACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTGGCAGAGTGTGTAACAAATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGGAGAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGGAATGTGTGCGAACGTGTCGTGTGTTGTGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCACCGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGGCCCAGCAGCAGCAGCACCGGATCACCCAACACCAGCCAGCGCGAGTCGCCGCCCGAAATGGATACAACCACCACCTCCAACGGCAGCCCGTCATGGCGCGGGCGTACTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6321#0 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGTGATAAGCGTGATTACGG 45 consensus_6321#1 CCGAGCGCACGCACGCCAGTTCCGCTGCAGTTTTCG-GGGGGTGATAAGCGTGATTACGG 59 ** *** * * ** * ******************* consensus_6321#0 GAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGAATA 105 consensus_6321#1 GAGTCAGAAGTGCGAATCAATCGTTTCCCCACGCGAAACAGTGCCACTGCTGCAGGGATA 119 ******************************************************** *** consensus_6321#0 TCGAAATAACTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCG 165 consensus_6321#1 TCGAAATACCTGGCTCGTGCTAGAGTGAAGCGAAAAAGAAGCGAAAGTGATACGAAACCG 179 ******** *************************************************** consensus_6321#0 AAGTGAGTGTGAATTTATTCTCGAAAAAAGCGAAACGTCGAAATCGAAAGCAGC-GCACA 224 consensus_6321#1 AAGTGAGTGTGAATTTATTCACGAAAA--GCGAAACGTCGAAATCGAAAGCAGCAGCACA 237 ******************** ****** ************************* ***** consensus_6321#0 CACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTTGCAGAGTGTGTAACA 284 consensus_6321#1 CACGCACTCGGGCCCGCACTGATAAGCGTGTGCGGTGAATCTTTGGCAGAGTGTGTAACA 297 ******************************************** *************** consensus_6321#0 AATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGAA 344 consensus_6321#1 AATTTACCTTCCCCCGCGGTGCGCACCAGCTTCCGTGTCCGATTGTTTCCGCCAGGTGGA 357 ********************************************************** * consensus_6321#0 GAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGCAATGTGTGCGAACGTGTCGTGTGTTG 404 consensus_6321#1 GAAGCAAAAAAGCAGCAGCAGCAACCGCAAACGGAATGTGTGCGAACGTGTCGTGTGTTG 417 ********************************* ************************** consensus_6321#0 TGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCAC 464 consensus_6321#1 TGCGCGCTGCCAGCATGATGTCACAGTGTGCTACGCTGTGCAGTGCCCCACGGATGCCAC 477 ************************************************************ consensus_6321#0 CGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGG 524 consensus_6321#1 CGCGGCTTAGTCACCGGATAGGTGGGATGGCTGGTGCTTCCATATCCTTCCACAGCACGG 537 ************************************************************ consensus_6321#0 CCCAGCAGCAGCAGCACCGGGCCACCCAACACCTGCCAGCGCGAGTCGCCGCCCGAACTG 584 consensus_6321#1 CCCAGCAGCAGCAGCACCGGATCACCCAACACCAGCCAGCGCGAGTCGCCGCCCGAAATG 597 ******************** *********** *********************** ** consensus_6321#0 GATACAACCACCACCTCCAACGGCAGCCCGTGATGGCGCGGGCGTACTTCTTTCCGGGAG 644 consensus_6321#1 GATACAACCACCACCTCCAACGGCAGCCCGTCATGGCGCGGGCGTACTTCTT-------- 649 ******************************* ******************** consensus_6321#0 GTGGCCCGGTGCGGTCCTACACCCAGGCCGCCTCGACCCTCACCCGGGAGCAGCTGCACG 704 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 ATCTGGTGTACAGGTTAAACGAAGATGAAAGAGAATTGCTCATGAACACGCTCAAGCAAT 764 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 TCGAATCCAACAAAGTGAAGGCAAAGTTTGAAGGGCAGTTGGCAGCAACCGTTTGGCGAA 824 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 GTAGATTCGGCCGTCCAGCAAAGCTAAAGCCGGTCCTGGGTGATGTAGATCCGACCGGTT 884 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 CCTACTGCGCGGTGCCGGAAGATTGGCTGCAAAAGAAGTTCGCCGAAACAGTGCCAGTAC 944 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 CACCGACTTCGGACCTCATGAAACTTGGATTGGTGAACGCCCTCCCATTCATTGGATTTG 1004 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 GTTTCCTTGACAACTTTACCATGATCATTGCGGGCGATTACATCGAGCACACGCTCGGGC 1064 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 TGTTCATGTGCATATCGACGATGGCGGCGGCAGCACTGGGGAACACCATCAGCGACGTAA 1124 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 TCGGCATCGGGTCCGCCTTCTACGTGGAGAAGCTGGCCGAAATGAGTGGCGTGAAGCCGC 1184 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 CGAAGATGTCGCCGATCCAGCTGGAGATGAAAGCCAGCCGAAGGGCGGCCAATTTGGGAC 1244 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 GAGTGCTGGGTATTACCATCGGATGTCTGCTGGGAATGTGCCCTCTATTATTCATGAAGG 1304 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 AGGATAAGGAGAAGGAAAAGGACAAGGATAAGAACAAGCCGTCGGAAGCAAGTGCGACTG 1364 consensus_6321#1 ------------------------------------------------------------ consensus_6321#0 ATGCTGCTGCTGCTGCTGCGGATGGTGTTGCGAACATTGTTGCCGTGAA 1413 consensus_6321#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||