These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence [CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGGCACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGG] [+] EMBL BM583697 [CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGGCACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCA ] [+] EMBL BM605229 [ ccgGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTTTTGTGCTGGGTGGGTGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGAATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCAGACCAGCGTCCTATGTTAATATTTAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTCCGCCTTTTCGGGTACTGTATCGTTCC TTTTCGACCGGATCTGATCGAGCTTTCACCAGGCACCAGGCGTTCTCTCTTTATTCTACCATCACAGGAACCCCAACCAACCAACAGCACTAGCAATGAGCCGACCCTTTGTACTGCTGGTCCTCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCT ] [+] EMBL BM628250 [ CCGCGCGTGCCTAACCAATGTGTGTGTTTCGGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTACATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGG] consensusID : consensus_6333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence [GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGCTCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACCGGGATTTGATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCGTACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTCAACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAACTGGGACGCCCTTCCAGGATTCTATTGGGCAATCGCCGTTAGGGCAAANGAAACGGCANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGACAGAACTTTTGGAAAACACCCCGTGGCCAGGTACTTGGGCCACAAAACAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGTATTGGGCATTACCCTTGGAGCCCTTTGGTGGAAGACACNCCTTCCGGCAATTNGCCAATTACTTGGAAAAATTTGGGCNGTGGGCAAGACCTAACCCCACAAAACCGGGTAACACACCCACAAATTATGGCNGGTTTCCAATTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATTCTAAACGCCCGGGAANCGAACAGGGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGGAAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGCGAGAAAATTGGTTCCCCTTTTCCTTTCACACAAAGCCCANATTATAATAT] [+] EMBL AL696721 [GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGCTCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACCGGGATTTGATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCGTACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTCAACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAACTGGGACGCCCTTCCAGGATTCTATTGGGCAATCGCCGTTAGGGCAAANGAAACGGCANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGACAGAACTTTTGGAAAACACCCCGTGGCCAGGTACTTGGGCCACAAAACAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGTATTGGGCATTACCCTTGGAGCCCTTTGGTGGAAGACACNCCTTCCGGCAATTNGCCAATTACTTGGAAAAATTTGGGCNGTGGGCAAGACCTAACCCCACAAAACCGGGTAACACACCCACAAATTATGGCNGGTTTCCAATTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATTCTAAACGCCCGGGAANCGAACAGGGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGGAAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGCGAGAAAATTGGTTCCCCTTTTCCTTTCACACAAAGCCCANATTATAATAT] consensusID : consensus_6333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCGGACGCGTGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGGTAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCTGGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA] [+] EMBL BM598730 [CCGCGGACGCGTGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTCGCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGGATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGAGCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAACGACCTGTTTATGCCGCACAATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAACGGACAGTACGGGATTGATGGGGGGCGTTATCTTCCCAAGCGTGTGCCGACCGGATTTACGGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACTCTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGGTAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCTGGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6333#0 CCGGTCGTTAGCGGAGAAAGAGACAGTGCCACAGCGCGTTCATAAGCACGTGTGTTGTGC 60 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 --------GCAAGAATCGCCAGCCACGGTTTAAATGCCTGCACAATGAAGCAGATCGAGC 52 consensus_6333#0 TGGGTGGG---TGTGCTGAGTTGTGTTTGAATTTCACCCATCACCGGAAAAAGGAAGCGA 117 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 TCGTTCGGACTTGACCTGACCGGTGAGGAGGATTCG---AACGGACAGTACCGGGATTTG 109 consensus_6333#0 ATAGAAGGAAAAACCGTTAAAAGTGCTGCATGCATTGCACCTTACCCGTGCCGTGCACCA 177 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 ATGGGGGGCGTTATCTTCCCAAGCGTAGTGCCGACCGGATTTACGGGCATGCGAGGACCG 169 consensus_6333#0 GACCAGCGTCCTATGTTAATATT--TAGTACGTCGGGGTAGGATTTGAGTTGTATTTTTC 235 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 TACGTTGTCCCTTCAGTGGGTTCAATGGAATGCGGGGCNAGAAAGTCACTCTCACTATTC 229 consensus_6333#0 CGCCTTTGCGGGTACTGTATCGTTCCGTTTTCGACCGGACCTGATCAAGCTTTCACCAGG 295 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 AACTGGAACAATCAGTGCATCACACGGGGCGGTTCCAACTCTTACCGGGGACAGGTAAAA 289 consensus_6333#0 CACCAGGCGTTCTCCCTTTATTCTTCCATCACAGGAACCCCCACCAACCAACAGCACTAG 355 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 C-TGGGACGCCCTTCCAGGATTCT---ATTGGGCAATCGCCGTTAGGGCAAANGAAACGG 345 consensus_6333#0 CAATGAGCCGACCCTTTGTACTGCTGGTCCTCG--CGTGCCTAACCAATGTGTGTGTTTC 413 consensus_6333#2 ------------------------------------------------------------ consensus_6333#1 CANGCTTCTGAGCAACCATACGGCTGGNACGCAACCGNACTTGGGAAGTCNATATGGGAC 405 consensus_6333#0 GGAGGTTCCCGGCGATGCTATGCCCCGACCGAGCACCGACGATGATGATAGGCCCAATTA 473 consensus_6333#2 -----------------------------------------------------CCGCGGA 7 consensus_6333#1 AGAACTTTTGGAAAACACC---CCGTGGCCAGGTACT-----------TGGGCCACAAAA 451 * * consensus_6333#0 CATGGCATTCAACGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTC 533 consensus_6333#2 CGCG----TGGGCGAAAACGCATTCAACGATAACGACCTTTCACCATCGCCCACTCCCTC 63 consensus_6333#1 CAGAAGTTTTCCCCAAAACTATTCCTCCGGTAGT-ATTGGGCATTACCCTTGGAGCCCTT 510 * * * ***** * * ** ** * ** * * **** consensus_6333#0 GCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGG 593 consensus_6333#2 GCCCAGTGACGCGTCCCGGCTGATGGGGGACGGTGCCACGGGTCACGGTGCTGGGGATGG 123 consensus_6333#1 TGGTGG-AAGACACNCCTTCCGGCAATTNGCCA-ATTACTTGGAAAAATTTGGGCNGTGG 568 * * * ** * * * ** * * * ** *** consensus_6333#0 ATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGA 653 consensus_6333#2 ATTAGCACGTGGTCTGTACGGCTGGAGTGGAGCTATGCCTCGATGGCGGCTCAGTCCGGA 183 consensus_6333#1 GCAAGACCTAACCCCACAAAACCGG-GTAACAC-ACCCACAAATTATGGCNGGTTTCCAA 626 ** * * * * ** ** * * * ** *** * * * consensus_6333#0 GCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAAC-GACCTGTTTATGCCGCACA 712 consensus_6333#2 GCTGCTCGATGGTTTGAGGGCGGCGCTCGAGGTGGAAAAC-GACCTGTTTATGCCGCACA 242 consensus_6333#1 TTATGGGGGCAACCTCAGGACGGCCAGCGGGGAAACCAATTAAACNGGAANTNCCCAATT 686 * * *** **** ** ** ** * * * * ** * consensus_6333#0 ATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAAC----GGA 768 consensus_6333#2 ATGAGCAGATCAAGCTCGGCCGGACGGACCTGACCGGTGAGGAGGATTCGAAC----GGA 298 consensus_6333#1 CTAAACGCCCGGGAANCGAACAG--GGGACTTCNCGGTAGGGGGCGCCCACACCCAAGGG 744 * * * ** * * ** ** **** ** * * ** ** consensus_6333#0 CAGTACGGGATTGATGGGGGGCGT---TATCTTCCCAAGCGTG-TGCCGACCGGATTTAC 824 consensus_6333#2 CAGTACGGGATTGATGGGGGGCGT---TATCTTCCCAAGCGTG-TGCCGACCGGATTTAC 354 consensus_6333#1 AAACACAGGAAATCAAGCGGTCTTACATATCACCNCAAAAGAAATCCTTACCAAAGNGGC 804 * ** *** * ** * * **** * *** * * * *** * * consensus_6333#0 GGGCATGCGAGGACGCCGTGTCCCTTCAAGGTTCAATGGAATGCGGGGCAAGAAGTCACT 884 consensus_6333#2 GGGCATGCGAGGACGCCGTGTCCCTTCAGGGTTCAATGGAATGCGGGGCAAGAAGTCACT 414 consensus_6333#1 GAGAAAATTGGTTCCCCTTTTCCTTTCAC------ACAAAGCCCANATTATAATAT---- 854 * * * * * ** * *** **** * * * * * * consensus_6333#0 CTCACTATTCAACTGGAACAATCAGGCATCACGGGGG----------------------- 921 consensus_6333#2 CTCACTATTCAACTGGAACAATCAGGCATCACGGGGCGGTTCCAACTCTTACCGGGACGG 474 consensus_6333#1 ------------------------------------------------------------ consensus_6333#0 ------------------------------------------------------------ consensus_6333#2 TAAACGGGCGCCTTCAGGATTTATGGGAATGCGTGGCAAGAAGGGCTTTGACACATCGCT 534 consensus_6333#1 ------------------------------------------------------------ consensus_6333#0 ----------------------------------------- consensus_6333#2 GGACGAACGATGGAGTTTGGACGACTTGAACACCGGCAGTA 575 consensus_6333#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||