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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence
[AGATCGCACGAGGTTGNTAGCTTGAGGCTCGATATGGGCTCACCACACCACCACCATCGAGCGGTTCGTCACAGCGTCCCACCACCACGGCGACGTTCTCGTCCCGGTTTATGGGACCGGGAGGGATCCGCCCGTTCGGTACAGTTGCTCAACCCTCGCTAGTCAGCCACCCGTTGCGTACGATTGCGCCGGGTATTATCGGTGGTGGTGAAGCCACCGCGGGCCCTTCCGGTTCGCTGGAAGCCGGCAGCAGCAGCAGCCGTTCGATGGGAGGTTCGGCTGCCGCCGAACGAACACCGCTGCTCGGTAGCAAAAAGTCATAGCACCGGGCGGAGTGGGTCTAACGGAGCGCGGCAACTGATGCTTAGCCAGGAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGCGAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCCTGTACTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATAAAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACGTAACGATCGAACCACAACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTAAATAAGGTTACTCCAAGACGGTTCG-TAAACCATTTTTTTTGCAAGGCAACTACTACTACTAAAAAATGCTAAATCTGGGATCAACGGAAGGTAAACCGGGGGAAAGCAAAATTAAAAAAAAAAACGCATGATTATGGTATTGCTTGTACTACTACCACGCTGCCGTTGGTAAAGGCTTCTCTGAAAGATGAAGGCCACTTTTAACGTACCACCATCATCATCCCCACTGCCCCGCTCTGTGTGTGTGTAAAATGATAGCCAAATGGATCGAGATGCGCGTGATATAAAAAGAACGGGCAGCAGATAAGCAAGGGGAA]
[+] EMBL AL696366 [AGATCGCACGAGGTTGNTAGCTTGAGGCTCGATATGGGCTCACCACACCACCACCATCGAGCGGTTCGTCACAGCGTCCCACCACCACGGCGACGTTCTCGTCCCGGTTTATGGGACCGGGAGGGATCCGCCCGTTCGGTACAGTTGCTCAACCCTCGCTAGTCAGCCACCCGTTGCGTACGATTGCGCCGGGTATTATCGGTGGTGGTGAAGCCACCGCGGGCCCTTCCGGTTCGCTGGAAGCCGGCAGCAGCAGCAGCCGTTCGATGGGAGGTTCGGCTGCCGCCGAACGAACACCGCTGCTCGGTAGCAAAAAGTCATAGCACCGGGCGGAGTGGGTCTAACGGAGCGCGGCAACTGATGCTTAGCCAGGAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGCGAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCCTGTACTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATAAAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACG ]
[+] EMBL BX626368 [ AGCGTCCCACCACCACGGCGACGTTCTCGTCCCGGTTTATGGGACCGGGAGGGATCCGCCCGTTCGGTACAGTTGCTCAACCCTCGCTAGTCAGCCACCCGTTGCGTACGATTGCGCCGGGTATTATCGGTGGTGGTGAAGCCACCGCGGGCCCTTCCGGTTCGCTGGAAGCCGGCAGCAGCAGCAGCCGTTCGATGGGAGGTTCGGCTGCCGCCGAACGAACACCGCTGCTCGGTAGCAAAAAGTCATANCACCGGGCGGAGTGGGTCTAACGGAGCGCGGCAACTGATGCTTAGCCAGGAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGCGAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCCTGNACTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATAAAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACGTAACGATCNAACCACAACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTAAATAAGGTTACTCCAAGACGGTTCGTTAAACCATTTTTTTTGCAAGGCACCTA ]
[+] EMBL BX625000 [ GGCCCTTCCGGTTCGCTGGAAGCCGGCAGCAGCAGCAGCCGTTCGATGGGAGGTTCGGCTGCCGCCGAACGAACACCGCTGCTCGGTAGCAAAAAGTCATAGCACCGGGCGGAGTGGGTCTAACGGAGCGCGGCAACTGATGCTTAGCCAGGAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGCGAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCCTGTACTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATAAAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACGTAACGATCGAACCACAACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTAAATAAGGTTACTCCAAGACGGTTCG TAAACCATTTTTTTTGCAAGGCAACTACTACTACTAAAAAATGCTAAATCTGGGATCAACGGAAGGTAAAC ]
[+] EMBL BX609671 [ ATGCTTAGCCAGTAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGCGAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCCTGTACTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATAAAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACGTAACGATCGAACCACAACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTAAATAAGGTTACTCCAAGA GGTTCG TAAACCATTTTTTTTGCAAGGCAACTACTACTACTAAAAAATGCTAAATCTGGGATCAACGGAAGGTAAACCGGGGGAAAGCAAAATTAAAAAAAAAAACGCATGATTATGGTATTGCTTGTACTACTACCACGCTGCCGTTGGTAAAGGCTTCTCTGAAAGATGAAGGCCACTTTTAACGTACCACCATCATCATCCCCACTGCCCCGCTCTGTGTGTGTGTAAAATGATAGCCAAATGGATCGAGATGCGCGTGATATAAAAAGAACGGGCAGCAGATAAGCAAGGGGAA]
consensusID : consensus_6338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[AGAATCCCCACGAGTTACTANCAAACTACTACTACCAACNCGTCGTCGTACGATGAAAACGTAACGACTCGAACCACTAGACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTGAACTAAGGTTACTCCAAGAACGGTTCGGTAAACCCACTTNTCNNTGCACAGGCAATCTACTACTACTACAGAACACATGCTAATACTCTGGCGTATCATACCAGTGCACAGGTTAACACCGGCGGTGCAATAGCCAAAATTAATACAAGAGAACATACACGCATGAATATATGGNTATTCGCTTGGTGACTACCTACTCACAGTCCTGNCGTTGAGTTAACAGGCTTTTCATCTTGGAATAGATGGAAGTGACTCACTTATCTAACCGTTACCACGCAAATCGATCGATCCCGCACTTGTNGCCCGACATCATGTTGAATGATAGTGGTAAGATAGTGTAGGTTACGGCGCCANANACTTGGTGCATTTTCTGAAGGACCTGNGCCGACCGAGTGCGATGTAGTTATACACAAACNCAATNAGCGGAGCGACCANGGCACCACGGCAACTTATACTGAGCTATAGGAGGCGTGGGAGACACGGCCCGTCCCTAAGATCCCGAAAGGTTTACACGAAGGCAGAACAGAGCTNTACCGGGGACAACAGNCGTATCCGGACTGGTGAAAC]
[+] EMBL AL692572 [AGAATCCCCACGAGTTACTANCAAACTACTACTACCAACNCGTCGTCGTACGATGAAAACGTAACGACTCGAACCACTAGACGAAGAGAGTACTGTTCGAAGTGAATAGTTTGATGCCAACGTTGGGCGTGCTATTGTGAACTAAGGTTACTCCAAGAACGGTTCGGTAAACCCACTTNTCNNTGCACAGGCAATCTACTACTACTACAGAACACATGCTAATACTCTGGCGTATCATACCAGTGCACAGGTTAACACCGGCGGTGCAATAGCCAAAATTAATACAAGAGAACATACACGCATGAATATATGGNTATTCGCTTGGTGACTACCTACTCACAGTCCTGNCGTTGAGTTAACAGGCTTTTCATCTTGGAATAGATGGAAGTGACTCACTTATCTAACCGTTACCACGCAAATCGATCGATCCCGCACTTGTNGCCCGACATCATGTTGAATGATAGTGGTAAGATAGTGTAGGTTACGGCGCCANANACTTGGTGCATTTTCTGAAGGACCTGNGCCGACCGAGTGCGATGTAGTTATACACAAACNCAATNAGCGGAGCGACCANGGCACCACGGCAACTTATACTGAGCTATAGGAGGCGTGGGAGACACGGCCCGTCCCTAAGATCCCGAAAGGTTTACACGAAGGCAGAACAGAGCTNTACCGGGGACAACAGNCGTATCCGGACTGGTGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6338#0 AGATCGCACGAGGTTGNTAGCTTGAGGCTCGATATGGGCTCACCACACCACCACCATCGA 60
consensus_6338#1 -----------------------------------AGAATCCCCACGA-GTTACTANCAA 24
* ** **** ** * * *
consensus_6338#0 GCGGTTCGTCACAGCGTCCCACC--ACCACGGCGACGTTCTCGTCCCGGTTTATGGGACC 118
consensus_6338#1 ACTACTACTACCAACNCGTCGTCGTACGATGAAAACGTAA-CGACTCGAACCACTAGACG 83
* * * ** * * * ** * * **** ** * ** * ***
consensus_6338#0 GGGAGGGATCCGCCCGTTCGGTACAGTTGCTCAACCCTCGCTAGTCAGCCACCCGTTGCG 178
consensus_6338#1 AAGAGAGTACTGTTCGAAGTGAATAGTT-TGATGCCAACGTTGGGCGTGCTATTGTGAAC 142
*** * * * ** * * **** ** ** * * * * **
consensus_6338#0 TACGATTGCGCCGGGTATTATCGGTGGTGGTGAAGCCACCGCGGGCCCTTCCGGTTCGCT 238
consensus_6338#1 TAAGGTTACTCCAAGAACGGTT-----CGGTAAACCCACT--------TNTCNNTGCACA 189
** * ** * ** * * * *** ** **** * * * * *
consensus_6338#0 GGAAGCCGGCAGCAGCAGCAGCCGTTCGATGGGAGGTTCGGCTGCCGCCGAACGAACACC 298
consensus_6338#1 GGCAATCTACTACTACTACAG-------AACACATGCTAATACTCTGGCGTATCA-TACC 241
** * * * * * *** * * * * * * ** * * ***
consensus_6338#0 GCTGCTCGGTAGCAAAAAGTCATAGCACCGGGCGGAGTGGGTCTAACGGAGCGCGGCAAC 358
consensus_6338#1 AGTGCACAGGTTAACACCGGCGGTGCAATAGCCAAAATTAATACAAGAGAACATAC--AC 299
*** * * * * * * *** * * * * * ** ** * **
consensus_6338#0 TGATGCTTAGCCAGGAGCAAGGGTAGTAACAGTAGGGGTTAAAGGTCGAACTTAAGGTGC 418
consensus_6338#1 GCATGAATATATGGNTATTCGCTTGGTGACTACCTAC-TCACAGTCCTGNCGTTGAGT-T 357
*** ** * * * ** ** * * ** * * * **
consensus_6338#0 GAGTGTGTGTGTGTGTTAGTATCGGTGGAATGGAAAGGAATGAATGTGATTTGCC-TGTA 477
consensus_6338#1 AACAGGCTTTTCATCTTGGAATAGATGGAAGTGACTCACTTATCTAACCGTTACCACGCA 417
* * * * * ** * ** * ***** ** * * ** ** * *
consensus_6338#0 CTGTTGTCGTCTCCAACCGTGTGTTAGGCCAGAGCGTGCTGTGGAACTGGAAAAGTGATA 537
consensus_6338#1 AATCGATCGATCCCGCACTTGTNGCCCGACATCATGTTGAATGATAGTGGTAAGATAGTG 477
*** ** * *** * ** ** ** * *** ** * *
consensus_6338#0 AAGGCATACTGAGCTAGCAAATACTACTACCAATCGTCGTCTACGTGAAAACGTAA--CG 595
consensus_6338#1 TAGGT-TACGGCGCCANANACTTGGTGCATTTTCTGAAGGACCTGNGCCGACCGAGTGCG 536
*** *** * ** * * * * * * * * ** * **
consensus_6338#0 ATCGAACCACAACGAAGAGAGTACTGTTCGAAGTGA--ATAGTTTGATGCCAACGTTGGG 653
consensus_6338#1 ATGTAGTTATAC--ACAAACNCAATNAGCGGAGCGACCANGGCACCACGGCAACTTATAC 594
** * * * * * * * ** ** ** * * * * **** *
consensus_6338#0 CGTGCTATTGTAAATAAGGTTACTCCAAGACGGTTCGTAAACCATTTTTTTTGCAAGGCA 713
consensus_6338#1 TGAGCTATAGGAGGCGTGGGAG-----ACACGGCCCGT--CCCTAAGATCCCGAAAGGTT 647
* ***** * * ** * **** *** ** * * ****
consensus_6338#0 ACTACTACTACTAAAAAATGCTAAATCTGGGAT--CAACGGAAGGTAAACCGGGGGAAAG 771
consensus_6338#1 TACACGAAGGCAGAACAGAGCTNTACCGGGGACAACAGNCGTATCCGGACTGGTGAAAC- 706
** * * ** * *** * * **** ** * * ** ** * **
consensus_6338#0 CAAAATTAAAAAAAAAAACGCATGATTATGGTATTGCTTGTACTACTACCACGCTGCCGT 831
consensus_6338#1 ------------------------------------------------------------
consensus_6338#0 TGGTAAAGGCTTCTCTGAAAGATGAAGGCCACTTTTAACGTACCACCATCATCATCCCCA 891
consensus_6338#1 ------------------------------------------------------------
consensus_6338#0 CTGCCCCGCTCTGTGTGTGTGTAAAATGATAGCCAAATGGATCGAGATGCGCGTGATATA 951
consensus_6338#1 ------------------------------------------------------------
consensus_6338#0 AAAAGAACGGGCAGCAGATAAGCAAGGGGAA 982
consensus_6338#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||