These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence [CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCTTAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCAATAAAAAGAGAGAGAGAT] [+] EMBL BM585985 [CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCTTAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCA ] [+] EMBL BM628166 [ ccgGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCCATAAAAAGAGAGAGAGAT] consensusID : consensus_6345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCTTAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATATAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTGGGCTGTTTGCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTTTGCGAACCGTCCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTCGACGACGACGACGACAACCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCATCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGACAAATTCCGCT] [+] EMBL BM598871 [CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCTTAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATATAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTGGGCTGTTTGCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTTTGCGAACCGTCCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTCGACGACGACGACGACAACCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCATCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGACAAATTCCGCT] [+] EMBL BM598873 [ ATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGAT ] consensusID : consensus_6345#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTATAAATGATTTTATAGTATTTTCTTCACATCATCCTAGCATCGTGGCGTTCTGGTAAGATTATAGCAGAGTGTAAGAATTGATTAGCCCATACAAAACATTTCGACATCCCGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATAAAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTAGGCTGTTTGCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTTTGCGAACCGTTCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGACGACGACGACGACGACAACCACTGCGAAGAGCGTACT] [+] EMBL BM606261 [CCGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTATAAATGATTTTATAGTATTTTCTTCACATCATCCTAGCATCGTGGCGTTCTGGTAAGATTATAGCAGAGTGTAAGAATTGATTAGCCCATACAAAACATTTCGACATCCCGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATAAAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTAGGCTGTTTGCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTTTGCGAACCGTTCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGACGACGACGACGACGACAACCACTGCGAAGAGCGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6345#1 -------CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCT 53 consensus_6345#2 -----------------------------------------------------------C 1 consensus_6345#0 CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCT 60 consensus_6345#1 TAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAA--ACTAGCTGCA 111 consensus_6345#2 CGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTA 61 consensus_6345#0 TAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAA--ACTAGCTGCA 118 * * * * * ** * *** * ** **** ** *** * * consensus_6345#1 CGG-TAGGACTGTAAAACTGTGAGTGTAGTGTTTTGAT---GCATCGTGG---CATTCTG 164 consensus_6345#2 TAAATGATTTTATAGTATTTTCTTCACATCATCCTA-----GCATCGTGG---CGTTCTG 113 consensus_6345#0 CGG-TAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGG 177 * * ** * * * * * * * **** * ** * consensus_6345#1 GAAAGATT-GTAGCAGAGTGTAAGAATTG--ATTAGCCCACACGAAACATTTCGACATCC 221 consensus_6345#2 GTAAGATT-ATAGCAGAGTGTAAGAATTG--ATTAGCCCATACAAAACATTTCGACATCC 170 consensus_6345#0 GAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATC 237 * ***** * * * ** * *** * * ** * * * consensus_6345#1 CGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGG-TACTGACCGAGCCG 280 consensus_6345#2 CGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGG-TACTGACCGAGCCG 229 consensus_6345#0 TGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCC 297 *** * * ** ****** *** * **** * * * **** consensus_6345#1 TA--AGCAAAATAT--AGCAGAGGGGTCGCTAAGGTGATCCT-CGATTTGGGCCGATAAG 335 consensus_6345#2 TA--AGCAAAATAA--AGCAGAGGGGTCGCTAAGGTGATCCT-CGATTTGGGCCGATAAG 284 consensus_6345#0 TTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGAT 357 * **** ** ** ** ** * ** * * ** ** * consensus_6345#1 TTGGGCTGTTT---GCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTT----TGCG 388 consensus_6345#2 TTAGGCTGTTT---GCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTT----TGCG 337 consensus_6345#0 AGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCG 417 * * *** * *** ** * * * * **** consensus_6345#1 AACCGTCC--TGCAGCACACTCCGGGTCCC-TGTTACCGGAGGGGGACAGTC-TTGGCAG 444 consensus_6345#2 AACCGTTC--TGCAGCACACTCCGGGTCCC-TGTTACCGGAGGGGGACAGTC-TTGGCAG 393 consensus_6345#0 AGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTA 477 * * ** **** ** ** * ** *** * * * * * * * ** consensus_6345#1 TGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGG 504 consensus_6345#2 TGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGG 453 consensus_6345#0 TGTGAAAG-TTGTCCGC--CCG--TAGCAACGTGACATTCGCGCCAACGTTCCAATCCAG 532 ******** ** ** *** **** *** ** * ** * * * consensus_6345#1 GCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTC 564 consensus_6345#2 GCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGAC 513 consensus_6345#0 TCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGG--CTC 590 **** * ** *** ** * * * ** ** **** * * consensus_6345#1 GACGACGACG-ACGACAA-CCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCA 622 consensus_6345#2 GACGACGACG-ACGACAA-CCACTGCGAAGAGCGTACT---------------------- 549 consensus_6345#0 AGTTGCATCATATGATAAGTTGCTGTTT-GAACGTGTTGTGGTGATTGAAGTGTATCTGA 649 * * * ** ** *** ** *** * consensus_6345#1 TCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGAC 682 consensus_6345#2 ------------------------------------------------------------ consensus_6345#0 GCGCTTGGGTGAGCGTGTGTGCTATCAATAAAAAGAGAGAGAGAT--------------- 694 consensus_6345#1 AAATTCCGCT 692 consensus_6345#2 ---------- consensus_6345#0 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||