These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 980 fasta sequence [TTTTTTTTAACGAATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTTTTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACAATTGGGTGATGCTTCACACTTACGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGA--AAGGTGCCCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCA-CATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCGACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGCCGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAGTATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC] [+] EMBL AGA280394 [TTTTTTTTAACGAATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTTTTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTACTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATTTTTTAACGTGCTCGC CGAAGGCTTGCTTAAATGGCATCTTTAGCGTAAGCGATTGGAATAAAATCAACTTGTTTTACAATTGGGTGATGCTTCACACTTACGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTG ] [+] EMBL CNS09EQL [ CAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACA ] [+] EMBL CNS09R1J [ AACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACACCTGTGTGATGCTTCACACTTACGTACTACAACTACAACATTGCAAAACGCACGGAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCTCCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGA AAGGTGCCCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCA CATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCGACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGCCGC ] [-] EMBL BX614328 [ AAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGAAGAAGGTG CCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCATCA TACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAACATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTTAGTCCGGCAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCTGGTACGGGTT CGGGTCGGCCGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAGTATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC] consensusID : consensus_6346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTATTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATTGCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAAACGGTATATTTTCTTACGTGCTCGCCGAAGGCTTGCTTAAATGGGCNTCTATTANCGGTAAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTGTGANTNGCTTTCACACTTTACGGTTACTTAACAACTACCACNNTTGGCCAACGCAGCNNCGAAGTCCCTGGCTACGNGGGANTACAGAATAACAGGGCGAAGTTTAAACACCAAGTGNGTNAACTGTACCTCCCTAATACCGGCCGGAGTNCCCATGACAACGGCTTAGTTTTACNGNGTGGANTNGTNAACACCAGTGGGGGTTCNCGGCGGTAAACGCCGGNGATCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGTCCCGCCACTTATTTTGGGGCCTTTAGTTCCCCTCTCTNNNACTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTGGNTTGGGTGTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGGGTGCTTGGCCTGGTGGTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG] [+] EMBL AL931833 [GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTATTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATTGCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAAACGGTATATTTTCTTACGTGCTCGCCGAAGGCTTGCTTAAATGGGCNTCTATTANCGGTAAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTGTGANTNGCTTTCACACTTTACGGTTACTTAACAACTACCACNNTTGGCCAACGCAGCNNCGAAGTCCCTGGCTACGNGGGANTACAGAATAACAGGGCGAAGTTTAAACACCAAGTGNGTNAACTGTACCTCCCTAATACCGGCCGGAGTNCCCATGACAACGGCTTAGTTTTACNGNGTGGANTNGTNAACACCAGTGGGGGTTCNCGGCGGTAAACGCCGGNGATCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGTCCCGCCACTTATTTTGGGGCCTTTAGTTCCCCTCTCTNNNACTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTGGNTTGGGTGTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGGGTGCTTGGCCTGGTGGTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6346#0 -----TTTTTTTTAACG---AATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTT 52 consensus_6346#1 GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTA 60 * * * * * ***** *** **** ******************* consensus_6346#0 TTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAA 112 consensus_6346#1 TTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAA 120 ************************************************************ consensus_6346#0 TAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGT-CGTCACGTTTTGGAAGCATTT-TT 170 consensus_6346#1 TAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATT 180 *********************************** ******** ********** * ** consensus_6346#0 GCT-TGCGTCAGTAGTACT-GCTAT-CCAGTGCTGAATATGTATTCCTTACAGCTTT--A 225 consensus_6346#1 GCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAA 240 *** ******* ******* * *** ********************** **** ** * consensus_6346#0 ACTGTATGTTTTA--ACGTGCTCGCGGGCAGGCTTGCTTGAATGG-CATCT-TTAACG-T 280 consensus_6346#1 ACGGTATATTTTCTTACGTGCTCGCCGA-AGGCTTGCTTAAATGGGCNTCTATTANCGGT 299 ** **** **** ********** * ********** ***** * *** *** ** * consensus_6346#0 AAGCGATTGG--AATAAA-ATCA--ACTTG-TTTTACAATTGGGTGATGCTTCACACTTA 334 consensus_6346#1 AAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTG-TGANTNGCTTTCA 358 ********** ****** **** ***** ************ ** ** * * * * consensus_6346#0 CGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGC 394 consensus_6346#1 CACTTTACGGTTA---CTTAACAACTACCACNNTT----------GGCCAACGCAGCNNC 405 * *** *** * * *** * *** ** ** * * consensus_6346#0 GAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGAT 454 consensus_6346#1 GAAGTCCCTGGC--TACGNGGGANTA-CAGAATAACAGGGCGAA-----GTTTAAACACC 457 ** * * ** *** ** * ** * * ** ***** consensus_6346#0 GAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGAAAGGTGCCCGCATATTGAATTATCCT 514 consensus_6346#1 AAG----------TGNGTNAACTGTACCTCCCTAATACCGGCCG------GAGTNCCCAT 501 * * ** *** * ** * ** * *** ** * * * consensus_6346#0 CTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACG 574 consensus_6346#1 GACAACGGCTTAGTTTTACNGNGTG--GANTNGTNAACACCAGTGGGG-GTTCNCG-GCG 557 * ** * * *** * *** * * * * * ** * * * ** consensus_6346#0 GTGGCCTTTAGCACATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACT 634 consensus_6346#1 GTAAACGCCGGNGA--TCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGT-CCCGCCACT 614 ** * * * * *** * ** * * * * ** * ** **** consensus_6346#0 CTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCG 694 consensus_6346#1 T-----ATTTTGGGGCC--------------------------TTTAGTTCCCCTCTCTN 643 **** *** *** * * * ** consensus_6346#0 ACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGC 754 consensus_6346#1 NNA------CTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTG-GNTTGGGT 696 * * ** * ***** * ** ** * * * * * * * * * consensus_6346#0 AGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCT 814 consensus_6346#1 GTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGG------GTGCTTGGC--CTGGTG--- 745 * ** ** ** * *** ***** **** *** * * ** consensus_6346#0 TCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGC 874 consensus_6346#1 --GTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG-------------- 789 * ** * ** * * **** * * * ** * consensus_6346#0 CGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAG 934 consensus_6346#1 ------------------------------------------------------------ consensus_6346#0 TATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC 980 consensus_6346#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||