These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1456 fasta sequence [CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGTGCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTTCCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGGAGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTACCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACACCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCGTCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCGATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGAGCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGGAGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTTTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTACTCTAGAAGGGGGGACGGCTGTTGGTTGGTTTTGTGCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTTTTTGTACTTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAATTTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG] [+] EMBL BM581240 [CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGTGCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTTCCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGGAGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTACCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACACCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCGTCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCGATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGAGCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGGAGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACA ] [+] EMBL BX627511 [ GTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATACGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTTTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGT ] [+] EMBL BX613410 [ GCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCACTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTACTCTAGAAGGGGGGACGGCTGTTGGTTGGTTTTGTGCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTTTTTGTACTTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAATTTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG] consensusID : consensus_6349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCGGACGCGTGGGCTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCTCTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGTGCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTTTTTTTGTACTTCCCAC] [+] EMBL BM595274 [CCGCGGACGCGTGGGCTGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGACGGAACGGAGCGGGAGCAGCTGGTGGGTAGTCCGCAGGTAGCTCTGCCGAACAGCATCCAGGTGTCGATGGCGACTGGGGAGCTTTGTTACGCTGACGCGGGAACGAAGAAGGTTGAGTGTATTGATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGGGTTGGCCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACCTGTACGGTGTGCGCCAGAAGCCGATCAACTCGCCCGTGTTTGGCAACCACAAGATGTACGGCATGACGGCCGTCACCGACAAGTGCCCGCTGTTCCACAGCCCTTGCGTCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGCGTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAGACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGTGCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTTTTTTTGTACTTCCCAC] consensusID : consensus_6349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTAGTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATACGATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTATTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGCAGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGCTGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGTNNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGGGTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACTGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGTAACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAGCCCTTGCNGTCAG] [+] EMBL AL692532 [CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTAGTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATACGATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTATTGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGTCGGACTGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGCAGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGCTGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGTNNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGGGTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAAGCATCAACTGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGTAACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAGCCCTTGCNGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6349#0 CCGGTCCGCAAGGTTTCGTTGGTGACGGGGTGTCGCAGTGCCGTTCCATTCCACCGCCGT 60 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 GCAATGTGAGGAACAACTGCGGGCTGCATGCTGCCTGTGTGCCGAGCTATAGAGATCCTT 120 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 CCTCGTACGAGTGTATGTGCAATCAGGGCTTCTTTGGCGATGGGTTCGTCTGCACACCGG 180 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 AGCGCAACTGTGCCAATATCCCGAGCCTGTGCGATCCGAACGCTCGCTGCGAGTCCACTA 240 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 CCAACGGCTACCAGTGCATCTGTAACGATGGCTTCATCGGCAACGGGTCCGTCTGCAACA 300 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 CCGCTCACCGGCTGGACGATGGCTTCCTGCTCATCAGCCAGGGTGTGGCGAACATTCGCG 360 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 TCCCGCTGAACGGTGGACTCGGGTACCCCGTCACGATGGCGTTCATGTCGATCGGGCTCG 420 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 ATCGGGACTGTGCCGAGGGACGCATCTACTGGAGCGACATTGCGGCCCAGCAGATCGTGA 480 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 GCGCCAAGTACGATGGTACCGATCAGAAGCCGTTCATCACGAAGGACATCGTGTCGCCGG 540 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 -------------CCGAGGTTTACATCTACTAGATGATAGTAGTCGTNCCGCGGATTGTA 47 consensus_6349#0 AGGGTGTGGCGGTCGATTGGATCTCGCGCCGGCTGTACTGGACCGATTCGGCGAAGGATA 600 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 GTAGTCGGTCGATTGGATCTCGCGCCTGGCTGTACTGGACCGATTCGGACGAAGAGATAC 107 consensus_6349#0 CGATCGAGGTGGCGAGCCTGGACAATCCGGAGCAGAGGACGGTGCTGATTTCGAAGTTTT 660 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 GATCNAGTGGNGAGCCTGANAATCCGGANCAAAGTGGCGTGTGCTGATTTCNAAGTTTAT 167 consensus_6349#0 TGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGT-CGGAC 719 consensus_6349#1 --------------------------------------------CCGCGGACGCGTGGGC 16 consensus_6349#2 TGGTCAATCCGCGCGGCATTGCGGTCGATCCGCATCAGACGAAGCTGTACTGGT-CGGAC 226 * * * ** * consensus_6349#0 TGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGAC-GGAACGGAGC-GGGAGC 777 consensus_6349#1 TGGAATCGGGATGGGCCGAAGATTGAGTGGTCGAATTTGGAC-GGAACGGAGC-GGGAGC 74 consensus_6349#2 TGGAATCGGGATGGGCCGAAGATTGANTGGTCGAATTTGGACTGGAACGGAGCTGGGAGC 286 ************************** *************** ********** ****** consensus_6349#0 AGCTGGTGGGTAG-TCCGCAG-GTAGCACTGCCG-AACAGCAT-CCAG-GTGTCGATGGC 832 consensus_6349#1 AGCTGGTGGGTAG-TCCGCAG-GTAGCTCTGCCG-AACAGCAT-CCAG-GTGTCGATGGC 129 consensus_6349#2 AGCTGGTCGGTAGATCCGCAGTGTAGCACTGCCGCAACAGCATACCAGAGTGTCGATGGC 346 ******* ***** ******* ***** ****** ******** **** *********** consensus_6349#0 -GACTGGG-GAGCTTTGT---TACGCTGACGCGGGAACGAA--GAAGGTTG----AGTGT 881 consensus_6349#1 -GACTGGG-GAGCTTTGT---TACGCTGACGCGGGAACGAA--GAAGGTTG----AGTGT 178 consensus_6349#2 TGACTGTGTGAGCTCTANGTATACGCTGACGCGGGAACGANACGAAGGTNTTGATGGTGT 406 ***** * ***** * ******************* ****** **** consensus_6349#0 ATT-GATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGG 940 consensus_6349#1 ATT-GATACGTACAGCAGACAGATCCGCACGATCGCCAGCAATCTGACGTACCCGTTCGG 237 consensus_6349#2 NNTTGATACGTACAGCAGACAGATCCGCACGATCGNCAGCAATCTGACGTACCCGTTCGG 466 * ******************************* ************************ consensus_6349#0 GTTGG-CCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACCAAAAAGATCGAAA 999 consensus_6349#1 GTTGG-CCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAA 296 consensus_6349#2 GTTGGACCGTTACCGATGATTTGTTCTACTGGACGGATTGGATGACTAAAAAGATCGAAA 526 ***** **************************************** ************* consensus_6349#0 GCATCAACCTGTACG-GTGTG--CGCCAG-AAGCC-GATCAACTCGCCCGTGTTT--GGC 1052 consensus_6349#1 GCATCAACCTGTACG-GTGTG--CGCCAG-AAGCC-GATCAACTCGCCCGTGTTT--GGC 349 consensus_6349#2 GCATCAAC-TGTACGTGTGTTGCTGCCAGCAAGCCTGATCAACTCGCCCGTGCTATAGGT 585 ******** ****** **** ***** ***** **************** * ** consensus_6349#0 AACCACAAGATGTACGGCATGAC-GGCCGTCACCGAC-AAGTGCCCG-CTGT-TCCACAG 1108 consensus_6349#1 AACCACAAGATGTACGGCATGAC-GGCCGTCACCGAC-AAGTGCCCG-CTGT-TCCACAG 405 consensus_6349#2 AACCACAAGATGTACGGGATGACCGGCCGTCACCGACCAAGTGCCCGANTGTATCCACAG 645 ***************** ***** ************* ********* *** ******* consensus_6349#0 CCCTTGCG-TCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGC 1167 consensus_6349#1 CCCTTGCG-TCAGCAACAATGGTGACTGTCCGGAGGACAAGATTTGTCTGATCAATCCGC 464 consensus_6349#2 CCCTTGCNGTCAG----------------------------------------------- 658 ******* **** consensus_6349#0 GTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAG 1227 consensus_6349#1 GTGCCCCTTCCGGCCGTAGCTGCAAGTGTACGCGCAACTGCAACAATGACGTCGTATTAG 524 consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 ACTACTAAGAAGAATGTGTGT-ACTCTAGAAGGGGGGACGGCTGTTGG--TTGGTTTTGT 1284 consensus_6349#1 ACTACTAAGAAGAATGTGTGTTACTCTAGAAAGGGGGACGGCTGTTGGGTTTGGTTTTGT 584 consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 GCTTTTCTACTGTGGGCAACCTTTACAAACAGACAATCGGCCGTGCAGTAATGCGTGTTT 1344 consensus_6349#1 GCTTTTCTACTGCGGGCAACCTTTACAAACAGACAATCGGCCGTGTAGTAATGCGTGTTT 644 consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 TTTGTAC-TTCCCCACTTTTCCCTTTTTCCTTCCTGAAAGCTGAAACAAAAAAAAGCAAT 1403 consensus_6349#1 TTTTTGTACTTCCCAC-------------------------------------------- 660 consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 TTATCTTGACATACATTAGGATTAGCACAGAGAGAGAGAGAGAGTGGATGATG 1456 consensus_6349#1 ----------------------------------------------------- consensus_6349#2 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||