These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence [CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCCAGCAGCAGGGCGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTAGGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCGACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGTCGACGCTAAACCCACTGGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCCAACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA] [+] EMBL BM637615 [CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCCAGCAGCAGGGCGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAG ] [+] EMBL BM608468 [ CCGACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTAGGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCGACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGTCGACGCTAAACCCACTGGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCCAACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA] consensusID : consensus_6351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence [GGCAGAATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCG--GCAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCAACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGTTCCAGGCTAACAGGCTTCGACAANAGAAGGGGACACGGCCATAGGGGCAGCCAGAAACCCGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCGACGCTTGAACCCACTGGCCGCCCGGAGTTTTGG] [+] EMBL BX467762 [GGCAGAATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCG GCAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCAACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGTTCCAGGCTAACAGGCTTCGACAANAGAAGGGGACACGGCCATAGGGGCAGCCAGAAACCCGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCGACGCTTGAACCCACTGGCCGCCCGGAGTTTTGG] [+] EMBL BM601964 [ ccgAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAG ] consensusID : consensus_6351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCGAGGTTTGGTCGTGCAAACTTCCGGCAGGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGCAGTAAACACCCACACAAACACACAAGCAAATCGTTGCCGATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGTGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATCGGTGGCNGCTGGTGGCTGTGACGNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATACCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTATACCTGTACGACTCGGACCGTGGGACAGGCATTGNAGCACACACTGGGCCAACGAGAGGAACGNCGGANCTTGGCGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGAGTACCAATTGGTNGCGAATTGCGAGCGGAACGTATGGTGGAACGAAGTATACGGAACAATTGGCGAAGGGGAAG] [+] EMBL AL932184 [CCGAGGTTTGGTCGTGCAAACTTCCGGCAGGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGCAGTAAACACCCACACAAACACACAAGCAAATCGTTGCCGATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGTGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATCGGTGGCNGCTGGTGGCTGTGACGNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATACCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTATACCTGTACGACTCGGACCGTGGGACAGGCATTGNAGCACACACTGGGCCAACGAGAGGAACGNCGGANCTTGGCGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGAGTACCAATTGGTNGCGAATTGCGAGCGGAACGTATGGTGGAACGAAGTATACGGAACAATTGGCGAAGGGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6351#0 CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCC 60 consensus_6351#1 ----------------------------------------------------GGCAGA-- 6 consensus_6351#2 ------------------------------------------------------------ consensus_6351#0 AGCAGCAGGGCG-AACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACC 119 consensus_6351#1 ATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACC 66 consensus_6351#2 ------------------------------------------------------------ consensus_6351#0 AAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTA 179 consensus_6351#1 AAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTA 126 consensus_6351#2 ------------------------------------------------------------ consensus_6351#0 CTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCA 239 consensus_6351#1 CTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCA 186 consensus_6351#2 ----------------------------CCGAGGTTTGGT-CGTGCAAA--CTTCCGGCA 29 ** ****** ******** ********* consensus_6351#0 GGCTG-AAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 298 consensus_6351#1 GGCTG-AAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 245 consensus_6351#2 GGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 89 ***** ***************************************************** consensus_6351#0 CTCCTTG-AGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCG 357 consensus_6351#1 CTCCTTG-AGT------------AAACACCCACACAAACACACAAGCAAATCGTTTGCCG 292 consensus_6351#2 CTCCTTGCAGT------------AAACACCCACACAAACACACAAGCAAATCGTT-GCCG 136 ******* *** ******************************** *** consensus_6351#0 AT-CGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCG 416 consensus_6351#1 AT-CGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTG 351 consensus_6351#2 ATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTG 196 ** ******************************************************* * consensus_6351#0 -GCAGCAGCTCGAACACCTACACACACATC-ACCCTGCACGCGGGCAACG-GGTTCAATC 473 consensus_6351#1 -GCAGCAGCTCGAACACCTACACACACATC-ACCCTGCACGCGGGCAACG-GGTTCAATC 408 consensus_6351#2 TGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATC 256 ***************************** ******************* ********* consensus_6351#0 GGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCG 533 consensus_6351#1 GGGGCGCTGGTGGCGGCGGCGGC--AGGCGACGCAGAAACGGTGGCGGTCCGCAACACCG 466 consensus_6351#2 GGTG-GCNGCTGGTGGCTGTGAC--GNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATA 313 ** * ** * *** *** * * *** * * *** * ** * * consensus_6351#0 CGATCCCGTATCCGAACGATCCGTACGAC-TCGGACGGGGACAGCATGAGCACACCGCCC 592 consensus_6351#1 CGATCCCGTATCCGAACGATCCGTACGAC-TCGGACGGGGACAGCATGAGCACACCGCC- 524 consensus_6351#2 CCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTA- 372 * * ** ** ** * ** * * ** * * * ** consensus_6351#0 AACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAG 652 consensus_6351#1 AACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAG 584 consensus_6351#2 TACCTGTACGACTCGGACCGTGGGACAGGCATTG--NAGCACACACTG--GGCCAACGAG 428 ** * * * * * ** * * * * *** ** *** * ** ****** consensus_6351#0 GACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGC 712 consensus_6351#1 GACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGC 644 consensus_6351#2 AGGAACGNCGGANCTTGG----CGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGA 484 * ** * ** ** * * * * ** ** * ** * consensus_6351#0 ATCGAGGCGAT-GATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCT 771 consensus_6351#1 ATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCT 704 consensus_6351#2 GT---ACCAATTGGTNGCGAATTGCG-------AGCGGAACGTATGGTGG-AACGAAGTA 533 * * ** * * * ** ***** ** **** *** * consensus_6351#0 GGTA-GGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCG 830 consensus_6351#1 GGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGT-TCCAGGCTA 763 consensus_6351#2 TACGGAACAATTGGCGAAGGGGAAG----------------------------------- 558 **** ** ** * *** consensus_6351#0 ACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGT 890 consensus_6351#1 ACAGGCTTCGACAANAGA---AGGGGAC---ACGGCC-----ATAGGGGCAGCCAGAAAC 812 consensus_6351#2 ------------------------------------------------------------ consensus_6351#0 CGACGCTAAACCCACT--GGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCC 948 consensus_6351#1 C--CGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCG-ACGCTTGAACCC 869 consensus_6351#2 ------------------------------------------------------------ consensus_6351#0 AACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA 1005 consensus_6351#1 ACTGGCCGCCCGGAGTTTTGG------------------------------------ 890 consensus_6351#2 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||