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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[AATCGCCCGAGGTTATAAAATCCCATTACAGGAANTGAAATGTAAGGTTAACACTCGTCACTCTCTTCTCTGCTTGCTCTGCGCGAACGCATCCAATATTAAAGCGAATCGCAGGTTGCAAAGAGACACTTTTAATAGCGTATAACGAAGGAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCTAATAGTGATCGATCGGCACACAAACAAGTCGGTTCAGTCGGCTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGAAGAAGCAGATCAAAACAGCTGGAAGTGAAGTAGACAAGCGACAAAAGGTTACACAAAAAAACGTTATAAAACCCGCAATTTGTGGCTCCCGTTGTGCGCATATCTTTCCTTATGTTTAAAACCACAACCCACGCGTANNAAGAACAGGGACGCTCGTGCTCTACTAAATTAGTTCCATTAACGGATAATGGTCTCTCGAGCGTAGGATGCGATTTAGCTAGGAAAGCGTGATTGATAGCATTACTTTACGCTCGCCCAAAGGACCCAGCTGTAATGAAGTGAAAATTAAGAAGCATTTTGCACGAAAACCACGCGGATGTTTGCTGTTGCTTTCCGGCCCATCCCATCCCTGCGAAAGTCTCTAGTGGAAACCAGTTGAACCGCTTGAATCGAAATCGAAACCATTGTGCGGTAAAACCCCGCTTCCCTAAACTACTTGTATTATTAACTGGTAAGTGTTTTGTTTTA]
[+] EMBL AL932172 [AATCGCCCGAGGTTATAAAATCCCATTACAGGAANTGAAATGTAAGGTTAACACTCGTCACTCTCTTCTCTGCTTGCTCTGCGCGAACGCATCCAATATTAAAGCGAATCGCAGGTTGCAAAGAGACACTTTTAATAGCGTATAACGAAGGAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCTAATAGTGATCGATCGGCACACAAACAAGTCGGTTCAGTCGGCTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGAAGAAGCAGATCAAAACAGCTGGAAGTGAAGTAGACAAGCGACAAAAGGTTACACAAAAAAACGTTATAAAACCCGCAATTTGTGGCTCCCGTTGTGCGCATATCTTTCCTTATGTTTAAAACCACAACCCACGCGTANNAAGAACAGGGACGCTCGTGCTCTACTAAATTAGTTCCATTAACGGATAATGG ]
[+] EMBL BX609240 [ aGTTGCAAAGAGACACTTTTAATAGCTTATAACGAAGGAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCTAATAGTGATCGATCGGCACACAAACAAGTCGGTTCAGTCGGCTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGAAGAAGCAGATCAAAACAGCTGGAAGTGAAGTAGACAAGCGA AAAAGGTTACACAAAAAAACGTTAT AAACCCGCAATTTGTGGCTCCCGTTGTGCGCATATCTTTCCTTATGTTTAAAACCACAACCCACGCGTA AAAGAACAGGGACGCTCGTGCTCTACTAAATTAGTTCCATTAACGGATAATGGTCTCTCGAGCGTAGGATGCGATTTAGCTAGGAAAGCGTGATTGATAGCATTACTTTACGCTCGCCCAAAGGACCCAGCTGTAATGAAGTGAAAATTAAGAAGCATTTTGCACGAAAACCACGCGGATGTTTGCTGTTGCTTTCCGGCCCATCCCATCCCTGCGAAAGTCTCTAGTGGAAACCAGTTGAACCGCTTGAATCGAAATCGAAACCATTGTGCGGTAAAACCCCGCTTCCCTAAACTACTTGTATTATTAACTGGTAAGTGTTTTGTTTTA]
consensusID : consensus_6355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence
[AGCCAGATCCGACGAGGTTGCGCTAATGCGATAAAAATCCCATTACAGGAAATGAAATGTAAGGTTAACACTCGTACACTCTCTTCTCTGCTTGTCTGCGCTAACGCATCCAATATTAAAGCGGATCGCCGGTTGCAAGAGCGACACTTTTAATAGCGTATAGAGAAG-GAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCT-ATAGTGATCGATCGGCACACAGACAAGTCGGCTCAGT---CTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGGAGAAGCAAATC-AAACAG-TGGAACTGAATGAAG-TAGGCGAAAAAGGTTACACAAAAAAACGTTATAAACCCGCAATTTGTGGCTCCCGTTGTGCGCATATCTTTCCTTATGTTTAAAACCACAACCCAATCTTTATCACATGCCCTGTGCTCTCTTCGTTTTGCACAGCAACGCTACCGGACACATTGCTTTCGGGCCCGTCGGGGAAGTGAACGTATTCTTCAATGTATTCCACATCCTCGTACAACATGTCTTCCTCATTTTCCGGAACTTCCTCTGTCTCTTCGGACAGCCATTGTACGTGCATTGCGTCTCCCATGCTGTGGACCGGTGCCTTTTGCCTAAAACAAGAATAAATAAATTA]
[+] EMBL BX469054 [AGCCAGATCCGACGAGGTTGCGCTAATGCGATAAAAATCCCATTACAGGAAATGAAATGTAAGGTTAACACTCGTACACTCTCTTCTCTGCTTGTCTGCGCTAACGCATCCAATATTAAAGCGGATCGCCGGTTGCAAGAGCGACACTTTTAATAGCGTATAGAGAAG GAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCT ATAGTGATCGATCGGCACACAGACAAGTCGGCTCAGT CTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGGAGAAGCAAATC AAACAG TGGAACTGAATGAAG TAGG ]
[+] EMBL BX608539 [ AAGTGAAGAAAATAGATAAAACAATGAATGTTAGGGTAAGGAATTGGGAAAGATGCAGCACACTGTGAGCCTAATATCAAATGTTAGATTTATCGTGATTTTGACGCTAATAGTGATCGATCGGCACACAAACAAGTCGGTTCAGTCGGCTATTGTTACAGTAGGTTAAACAAAAACGTATGCTACGGGGAATGGTATAAAGTAGCAGGAAAGATGAAGAAGCAGATCAAAACAGCTGGAAGTGAA GTAGACAAGCGAAAAAGGTTACACAAAAAAACGTTATAAACCCGCAATTTGTGGCTCCCGTTGTGCGCATATCTTTCCTTATGTTTAAAACCACAACCCAATCTTTATCACATGCCCTGTGCTCTCTTCGTTTTGCACAGCAACGCTACCGGACACATTGCTTTCGGGCCCGTCGGGGAAGTGAACGTATTCTTCAATGTATTCCACATCCTCGTACAACATGTCTTCCTCATTTTCCGGAACTTCCTCTGTCTCTTCGGACAGCCATTGTACGTGCATTGCGTCTCCCATGCTGTGGACCGGTGCCTTTTGCCTAAAACAAGAATAAATAAATTA]
consensusID : consensus_6355#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGGCTTGCGGCAAAGCTTCTGCAAAGAATTTTGAATATTTCGCCAGCGAATAGTTCGGCAAAAGGCACCGGTCCACAGCATGGGAGACGCAATGCACGTACAATGGCTGTCCGAAGAGACAGAGGAAGTTCCGGAAAATGAGGAAGACATGTTGTACGAGGATGTGGAATACATTGAAGAATACGTTCACTTCCCCGACGGGCCCGAAAGCAATGTGTCCGGTAGCGTTGCTGTGCAAAACGAAGAGAGCACAGGGCATGTGATAAAGATTGAAAGCATCGATCATGCATTCGATATGCTGCAGAACTCCGTGTGGTCCATCAAACCACCGGAACGGACCGGTACGATGGGACGCAAGGTGGCACATCCACGGCCCGCACCGGTCGGGCTGGCCAAGTCAGCCAAAAGCCCGGCCGAATGTTTGTCGCTTTTTCTGGACGCAGACGTTATCGCTATGATTACCGAGTACACCAACGAGCAGATTAAGGCCGAACAGCCCAACTATGCGCGCGAGCGCGATGCGAATCCAACGGACGAGATGGAAATTATGGCCCTGTTGGGTGTGCTGTACATTGCCGGCACGGTGCGCGATGGGCGGGAGAACATCGAGCGGCTGTTCGACACCAAAATGGGAACCGGGCTGGAAGCGGTCTACCTCACGATGACCTCGCTCCGG]
[+] EMBL BM642323 [CCGGCTTGCGGCAAAGCTTCTGCAAAGAATTTTGAATATTTCGCCAGCGAATAGTTCGGCAAAAGGCACCGGTCCACAGCATGGGAGACGCAATGCACGTACAATGGCTGTCCGAAGAGACAGAGGAAGTTCCGGAAAATGAGGAAGACATGTTGTACGAGGATGTGGAATACATTGAAGAATACGTTCACTTCCCCGACGGGCCCGAAAGCAATGTGTCCGGTAGCGTTGCTGTGCAAAACGAAGAGAGCACAGGGCATGTGATAAAGATTGAAAGCATCGATCATGCATTCGATATGCTGCAGAACTCCGTGTGGTCCATCAAACCACCGGAACGGACCGGTACGATGGGACGCAAGGTGGCACATCCACGGCCCGCACCGGTCGGGCTGGCCAAGTCAGCCAAAAGCCCGGCCGAATGTTTGTCGCTTTTTCTGGACGCAGACGTTATCGCTATGATTACCGAGTACACCAACGAGCAGATTAAGGCCGAACAGCCCAACTATGCGCGCGAGCGCGATGCGAATCCAACGGACGAGATGGAAATTATGGCCCTGTTGGGTGTGCTGTACATTGCCGGCACGGTGCGCGATGGGCGGGAGAACATCGAGCGGCTGTTCGACACCAAAATGGGAACCGGGCTGGAAGCGGTCTACCTCACGATGACCTCGCTCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6355#0 ---------------AATCGC-CCGAGGTTATAAAA-TCCCATTACAGGAANTGAAATGT 43
consensus_6355#1 AGCCAGATCCGACGAGGTTGCGCTAATGCGATAAAAATCCCATTACAGGAAATGAAATGT 60
consensus_6355#2 -------------------------------------CCGGCTTGCGGCAAAGCTTCTGC 23
* ** * * ** **
consensus_6355#0 AAGGTTAACACTCGT-CACTCTCTTCTCTGCTTGCTCTGCGCGAACGCATCCAATATTAA 102
consensus_6355#1 AAGGTTAACACTCGTACACTCTCTTCTCTGCTTG-TCTGCGCTAACGCATCCAATATTAA 119
consensus_6355#2 AAAG---AATTTTGAATATTTCGCCAGCGAATAGTTCGGCA-AAAGGCACCGGTCCACAG 79
** * * * * * * * * * ** ** ** *** * *
consensus_6355#0 AGCGAATCGCAGGTTGCAA-AGAGACACTTTTAATAGCGTATAACGAAGGA---AGAAAA 158
consensus_6355#1 AGCGGATCGCCGGTTGCAAGAGCGACACTTTTAATAGCGTATAGAGAAGGA---AGAAAA 176
consensus_6355#2 CATGGGAGACGCAATGCACGTACAATGGCTGTCCGAAGAGACAGAGGAAGTTCCGGAAAA 139
* * **** * * * * * * * * * *****
consensus_6355#0 TAGATAAAACAATGAATGTTAGGGTAAGGAAT----TGGGAAAGATG--CAGCACACTG- 211
consensus_6355#1 TAGATAAAACAATGAATGTTAGGGTAAGGAAT----TGGGAAAGATG--CAGCACACTG- 229
consensus_6355#2 TGAGGAAGACATGTTGTACGAGGATGTGGAATACATTGAAGAATACGTTCACTTCCCCGA 199
* ** *** * *** * ***** ** ** * * ** * * *
consensus_6355#0 TGAGCCTAATATCAA-ATGTTAGATTTATCGTGATTTTGACGCTAATAGTGATCGATCGG 270
consensus_6355#1 TGAGCCTAATATCAA-ATGTTAGATTTATCGTGATTTTGACGCTA-TAGTGATCGATCGG 287
consensus_6355#2 CGGGCCCGAAAGCAATGTGTCCGGT--AGCGTTGCTGTGCAAAACGAAGAGAGCACAGGG 257
* *** * * *** *** * * * *** * ** ** ** * **
consensus_6355#0 CACACAAACAAG-TCGGTTCAGTCGGCTATTGTTACAGTAGGTTAAACAAAAACGTATGC 329
consensus_6355#1 CACACAGACAAG-TCGGCTCAGTC---TATTGTTACAGTAGGTTAAACAAAAACGTATGC 343
consensus_6355#2 CATGTGATAAAGATTGAAAGCATCGATCATGCATTCGATATGCTGCAGAACTCCGTGTGG 317
** *** * * ** ** * * ** * * * ** *** **
consensus_6355#0 TACGGGGAATGGTATAAAGTAGCAGGAAAGATGAAGAAGCAGATCAAAACAGCTG-GAAG 388
consensus_6355#1 TACGGGGAATGGTATAAAGTAGCAGGAAAGATGGAGAAGCAAATCAAA-CAG-TG-GAAC 400
consensus_6355#2 TCCATCAAACCACCGGAACGGACCGGTACGATGG-GACGCAAGGTGGCACATCCACGGCC 376
* * ** ** * ** * **** ** *** ** *
consensus_6355#0 TGAAGTAGACAAGCGACAAAAGGTTACACAAAAAAACGTTATAAAACCCGCAATTTGTGG 448
consensus_6355#1 TGAATGAAGTAGGCGA-AAAAGGTTACACAAAAAAACGTTATAAA-CCCGCAATTTGTGG 458
consensus_6355#2 CGCACCGGTCGGGCTG-GCCAAGTCAGCCAAAAGCCCGGCCGAAT-------GTTTGTCG 428
* * ** * ** * ***** ** ** ***** *
consensus_6355#0 CTCCCGTTGTGCGCATATCTT-TCCTTATGTTTAAAACCACAACCCACGCGTANNAAGAA 507
consensus_6355#1 CTCCCGTTGTGCGCATATCTT-TCCTTATGTTTAAAACCACAACCCA---ATCTTTATCA 514
consensus_6355#2 CTTTTTCTGGACGCAGACGTTATCGCTATGATTA----CCGAGTACACCAACGAGCAGAT 484
** ** **** * ** ** **** *** * * ** *
consensus_6355#0 CAGGGACGCTCGTGCTCTACTAAATTAGTTCCATTA-ACGGATAATGGTCTCTCGAGCGT 566
consensus_6355#1 CATGC---CCTGTGCTCTCTTCGTTTTGCAC-AGCA-ACGC-TACCGGACACATTGCTTT 568
consensus_6355#2 TAAGG---------------CCGAACAGCCCAACTATGCGCGCGAGCGCGATGCGAATCC 529
* * * * * * ** *
consensus_6355#0 AGGATGCGATTTAGCTAGGAAAGCGTGATTGATAGCATTACTTTACGCTCGCCCAAAGGA 626
consensus_6355#1 CGGGCCCGTCGGGGAAGTGAACGTATTCTTCAATGTATT-CCACATCCTCGTACAACATG 627
consensus_6355#2 AACGGACGAGATGGAAATTATGGCCCTGTTGGGTGTGCTGTACATTGCCGGCACGGTGCG 589
** * * * ** * * * * *
consensus_6355#0 CCCAGCTGTAATGAAGTGAAAATTAAGAAGCATTTTG-CACGAAAACCACGCGGATGTTT 685
consensus_6355#1 TCTTCCT-CATTTTCCGGAACTTCCTCTGTCTCTTCG-GACAGCCATTGTACGTGCATT- 684
consensus_6355#2 -----CGATGGGCGGGAGAACATCGAGCGGCTGTTCGACACCAAAATGGGAACCGGGCTG 644
* *** * * ** * ** * *
consensus_6355#0 GCTGTTGCTTTCCGGCCCATCCCATCCCTGCGAAAGTCTCTAGTGGAAACCAGTTGAACC 745
consensus_6355#1 GCGTCTCCCATGCTGTGGACCGGTGCCTTTTGCCTAAAACAAGAATAAATAAATTA---- 740
consensus_6355#2 GAAGCGGTCTACCTCACGATGACCTCGCTCCGG--------------------------- 677
* * * * * *
consensus_6355#0 GCTTGAATCGAAATCGAAACCATTGTGCGGTAAAACCCCGCTTCCCTAAACTACTTGTAT 805
consensus_6355#1 ------------------------------------------------------------
consensus_6355#2 ------------------------------------------------------------
consensus_6355#0 TATTAACTGGTAAGTGTTTTGTTTTA 831
consensus_6355#1 --------------------------
consensus_6355#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||