These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 793 fasta sequence [ATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCCAAGTCACTT-GNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCAATAAA-TGTAC] [+] EMBL BX616674 [ATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACTAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAA ] [+] EMBL BX622322 [ GATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCTGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTTTTAGTTTAGGNTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGNTACAGCCCCAAGTCACTTGGTTTTCAGCTAGATTTGAAGCATCC AAACTATGACATATGAAACTGTCCCATAAA ] [+] EMBL BX626758 [ AGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGNCATCATTTAATGNTGGGGCAGTTACAGCCCCAAGTCACTT GNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCAATAAT TGTAC] [+] EMBL BX624402 [ TTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCGTCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTNGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCCCAGTCACTT GNTTTCAGCTAGATTTGAAGCATCCAAAACTATGACATATGAAACTGTCCAATAAATTGTAC] consensusID : consensus_6356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCAAANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGACTGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAACCACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGGGAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGATNAGTAGCCGGAGGCCCAGAGGAACAGCNCGATGANC] [+] EMBL BX468793 [GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCAAANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGACTGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAACCACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGGGAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGATNAGTAGCCGGAGGCCCAGAGGAACAGCNCGATGANC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6356#0 --------------------------------ATTGAAGGAAAAGTGCGAAATTAGCAGA 28 consensus_6356#1 GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGA 60 **************************** consensus_6356#0 AAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGT 88 consensus_6356#1 AAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGT 120 ************************************************************ consensus_6356#0 TAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGA 148 consensus_6356#1 TAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGA 180 ************************************************************ consensus_6356#0 CGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTA 208 consensus_6356#1 CGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTA 240 ************************************************************ consensus_6356#0 CGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGT--GGACAA--CTTCCCTTCCA 264 consensus_6356#1 CGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCA 300 ************************************** ****** ********** consensus_6356#0 A-CATCTACAGCAA-GTACGACAATCTG-CAG---CACAAAGTGAA-GAGCTTCTTCGA- 316 consensus_6356#1 AANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGAC 360 * *********** ************* *** **** ****** ************ consensus_6356#0 TGCTGA--GCCCATCATTGA----TAACATACGAGAATCGGAC---AAGTA--TGGTAAC 365 consensus_6356#1 TGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAAC 420 **** ************ * * ****** * *** ******* consensus_6356#0 -ACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCG-CCAAGGTGA 423 consensus_6356#1 CACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGG 480 ** ** ** * * * * * ** * * ** * **** **** consensus_6356#0 ACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAAC 483 consensus_6356#1 GAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGAT 540 * * * * * * * * * * * * * *** * * consensus_6356#0 AGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAG 543 consensus_6356#1 NAGTAGCCGGAGGCCCAGAGGA--ACAGCNCGATGANC---------------------- 576 * ** * * ** * * ** * consensus_6356#0 GAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTG 603 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 TATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACG 663 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 TCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCC 723 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 AAGTCACTTGNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCA 783 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 ATAAATGTAC 793 consensus_6356#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||