These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACTGGGGGGGACTATGCAATGGTTTTGTGCCACGTGTGGCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTACTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAAAAGGTTGAATCGTAACGGCAACAGAAGCAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGG-TTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGTGTACTGTGAAACAGGCCACAAAAATAAACTT] [+] EMBL BX613390 [ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACTGGGGGGGACTATGCAATGGTTTTGTGCCACGTGTGGCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTACTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAAAAGGTTGAATCGTAACGGCAACAGAAGCAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGG TTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAG ] [+] EMBL BX609216 [ TATATTTAAAAAGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGTGTACTGTGAAACAGGCCACAAAAATAAACTT] consensusID : consensus_6362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATCCCCCGAGGTTNTTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAACGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAACACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAGACAANCTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGACACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTATCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTACGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGCCGACCCT] [+] EMBL AL694646 [ATCCCCCGAGGTTNTTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAACGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAACACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAGACAANCTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGACACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTATCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTACGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGCCGACCCT] consensusID : consensus_6362#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GCACAACNAACAATGGGACTGCGCTTTTTAANAAGGTTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATATTTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAANGCCGGCATGTGC] [-] EMBL BX466889 [GCACAACNAACAATGGGACTGCGCTTTTTAANAAGGTTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATATTTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAATGAGTTTGGTTTTCAAGGGGTTTTTTTGCTATGTTTTTCTTTTTGTAAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACAAGCCACCGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTGATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACACGAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAANGCCGGCATGTGC] consensusID : consensus_6362#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAACGGTTTTGTGCCACGTGTGGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAACTGAGTTTGGTTTTCAACGGGGTTTACANTTGCTATGGTCTCGACCTTATTCCGTANAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGAGCCG] [+] EMBL BX466179 [AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAACGGTTTTGTGCCACGTGTGGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTAACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTACACTACAACTTCTCTATTATTACAAGCAAACAAACAATGGACTGCGCTTTTTAAGAAGGTTGAATCGTAACGGCAACAGATGTAGACAACAGCAACCAGATTTCCGTGAGATTATATTTAAAAAGCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATGTACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGGATATTTGGTGATAGAAACTGGAAGCAAGATGGACAAAAGGCACACACAGCAGTGGAAAGCTACAGTTGGGCCCTCTAGGGAATAACTGAGTTTGGTTTTCAACGGGGTTTACANTTGCTATGGTCTCGACCTTATTCCGTANAGAAGTTGCCTTTTTACGTACGCTTTCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGAGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6362#1 ---ATC-CCCCGAGGTTN-TTTTTGCTTTCATACACGATTACTGGGGNGGGACTATGCAA 55 consensus_6362#3 --AATCGCCACGAGGTNNGTTTTTGCTTTCATACACGATNTACTGGGGGGGACTATGCAA 58 consensus_6362#0 ATGTTTGCAATGTTTTATGTTTTTGCTTTCATACACGATTACT-GGGGGGGACTATGCAA 59 consensus_6362#2 ------------------------------------------------------------ consensus_6362#1 CGGTTTTGTGCCACGTGTGTGCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTA 115 consensus_6362#3 CGGTTTTGTGCCACGTGTG-GCTGTCGTGGACGTGGAATAAAATGATATTTTCAACGTTA 117 consensus_6362#0 TGGTTTTGTGCCACGTGTG-GCTGTCGTGTACGTGGAATAAAATGATATTTTCAACGTTA 118 consensus_6362#2 ------------------------------------------------------------ consensus_6362#1 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 175 consensus_6362#3 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 177 consensus_6362#0 ACTACTAATATTACTAACTAATCGTAATCCATCATCGCTCGTACTATACACACACACTAC 178 consensus_6362#2 ------------------------------------------------------------ consensus_6362#1 ACTACAACTTCTCTATTATTACAAGCAAACAACACAATGG-ACTGCGCTTTTTAAGAAGG 234 consensus_6362#3 ACTACAACTTCTCTATTATTACAAGCAAACAA-ACAATGG-ACTGCGCTTTTTAAGAAGG 235 consensus_6362#0 ACTACAACTACTCTATTATTACAAGCAAACAA-ACAATGG-ACTGCGCTTTTTAAAAAGG 236 consensus_6362#2 ------------------------GCACAACNAACAATGGGACTGCGCTTTTTAANAAGG 36 *** * ******* ************** **** consensus_6362#1 TTGAATCGT-AACGGCAACAGATGTAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 292 consensus_6362#3 TTGAATCGT-AACGGCAACAGATGTAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 293 consensus_6362#0 TTGAATCGT-AACGGCAACAGAAGCAGACAACAGC-AACCAGATTTCCGTGAGATTATAT 294 consensus_6362#2 TTGAATCGTCAACGGCAACAGAAGCAGACAACAGCTAACCAGATTTCCGTGAGATTATAT 96 ********* ************ * ********** ************************ consensus_6362#1 TTAAAAA-GCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATG 351 consensus_6362#3 TTAAAAA-GCCCTGGCAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTGTGCGATG 352 consensus_6362#0 TTAAAAA-GCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATG 353 consensus_6362#2 TTAAAAATGCCCTGGAAGAGGTGCGGTAAAATCGGAAGTAAATCAGCAACGTTAGCGATG 156 ******* ******* ************************************ ****** consensus_6362#1 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTNTTGAGGGCATATCTCNGGTGNTAG 411 consensus_6362#3 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 409 consensus_6362#0 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 410 consensus_6362#2 TACTTATAGCATAAGTCGCGTATGTGTGTGTGTGTTTTGAGGG---ATATTTGGTGATAG 213 *********************************** ******* ** * **** *** consensus_6362#1 ACAANCTGGAAGCAAGATGGACA-AAA--------------GGCACACACAGCAGTGGAC 456 consensus_6362#3 A--AACTGGAAGCAAGATGGACA-AAA--------------GGCACACACAGCAGTGGAA 452 consensus_6362#0 A--AACTGGAAGCAAGATGGACA-AAAAGCACACAAATAGAGGCACACACAGCAGTGGAA 467 consensus_6362#2 A--AACTGGAAGCAAGATGGACATAAAAGCACACAAATAGAGGCACACACAGCAGTGGAA 271 * * ****************** *** ****************** consensus_6362#1 ACAGCTACACGTTGGCGCCCTCTAGGGCAATAACTGAGTNNGGCTTTTCAAGGGGCTCTA 516 consensus_6362#3 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAACTGAGTTTGGTTTTCAACGGGGTT--- 504 consensus_6362#0 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAA-TGAGTTTGGTTTTCAAGGGGTTT--- 518 consensus_6362#2 A--GCTACA-GTTGG-GCCCTCTAGGG-AATAA-TGAGTTTGGTTTTC-AAGGGGTT--- 321 * ****** ***** *********** ***** ***** ** *** * *** * consensus_6362#1 TCTNCACNCTCNGCTACTGGTCNCANNACTTACNAGTAAGAAGCTTGCCTTATTTACGTA 576 consensus_6362#3 --TACANT---TGCTA-TGGTCTCGACCTTATTCCGTANAGAAGTTGCCTT-TTTACGTA 557 consensus_6362#0 -------TTTTTGCTA-TGTTTT-----TCTTTTTGTAAGAAG-TTGCCTT-TTTACGTA 563 consensus_6362#2 -------TTTTTGCTA-TGTTTT-----TCTTTTTGTAAGAAG-TTGCCTT-TTTACGTA 366 **** ** * *** * ******* ******** consensus_6362#1 CGCTTATCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACGCAGNCCGC 636 consensus_6362#3 CGCTT-TCGAATCGGTCAGGATGAACAAAAAGGGACTACTATCCTGCACACG--AGCCG- 613 consensus_6362#0 CGCTT-TCGAATCGGTCAGGATGAACAAAAACGGACTACTATCCTGAACACA--AGCCAC 620 consensus_6362#2 CGCTT-TCGAATCGGTCAGGATGAACAAAAACGGACTATTATCCTGAACACA--AGCCAC 423 ***** ************************* ****** ******* **** ** consensus_6362#1 CGACCCT----------------------------------------------------- 643 consensus_6362#3 ------------------------------------------------------------ consensus_6362#0 CGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTG 680 consensus_6362#2 CGCCCCTCGGGTGACAGGGGGACCGCCGGCACTTACTAGTAAACAAAACAAAAACGTGTG 483 consensus_6362#1 ------------------------------------------------------------ consensus_6362#3 ------------------------------------------------------------ consensus_6362#0 ATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACAC 740 consensus_6362#2 ATGGAGGAGAAAAGGTTTTGTAGAAATTGTTTTTTTACCGCTACCGGAAGTTCGACACAC 543 consensus_6362#1 ------------------------------------------------------------ consensus_6362#3 ------------------------------------------------------------ consensus_6362#0 GAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACAAAAAAAAACAAAACTTGT 800 consensus_6362#2 GAAAGACTGCCCGTTTTAGGCTTTGCAAAATGTATAAAAACTAAAAAANTACAAACAAAA 603 consensus_6362#1 ------------------------------- consensus_6362#3 ------------------------------- consensus_6362#0 GTACTGTGAAACAGGCCACAAAAATAAACTT 831 consensus_6362#2 NGCCGGCATGTGC------------------ 616 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||