These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence [CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATAAGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCACCTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGACTTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATCAAGGCTAGAAATGATGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGACAACAAATAGCATATTTAAGAGTAGGTGATACACATACACTCAAACACGGGCACGTAAAAGGTGTAAAAAATGGTAAAGCAACTGCACGATATCACGACACAATATACTAATATTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGATGTTAGTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCACTCACGGGGGATAAGTGTGTAGGCATATATGGTTTTTAATTACTCACATTCACTTAAGTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGCTTCCAATTCCAACTGTAA] [+] EMBL BM626256 [CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATAAGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCACCTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGACTTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATCAAGGCTAGAAATGATGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGA ] [+] EMBL BM624982 [ ccgGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTG GTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGACAACAAATAGCATATTTAAGAGTAGGTGATACACATACACTCAAACACGGGCACGTAAAAGGTGTAAAAAATGGTAAAGCAACTGCACGATATCACGACACAATATACTAATATTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGATGTTAGTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCACTCACGGGGGATAAGTGTGTAGGCATATATGGTTTTTAATTACTCACATTCACTTAAGTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGCTTCCAATTCCAACTGTAA] consensusID : consensus_6366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAGCTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTACAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACG] [+] EMBL BM603662 [CCGCGGACGCGTGGGCGGACGCGTGGGCTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAGCTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTACAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACG] consensusID : consensus_6366#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCAAATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG] [+] EMBL BM644965 [CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCAAATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG] [+] EMBL BM624091 [ ccGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCACCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCACAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGGTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6366#1 ------------------------------------------------------------ consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATA 60 consensus_6366#1 ------------------------------------------------------------ consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 GGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATA 120 consensus_6366#1 ------------------------------------------------------------ consensus_6366#2 ----------------------CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCA- 37 consensus_6366#0 AGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCAC 180 consensus_6366#1 ------------------------------------------------------------ consensus_6366#2 --AATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAAT 95 consensus_6366#0 CTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGAC 240 consensus_6366#1 ------------------------------------------------------------ consensus_6366#2 TTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATT 155 consensus_6366#0 TTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATC 300 consensus_6366#1 --------------------------------------------CCGCGGACGCGTGGGC 16 consensus_6366#2 GTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACA 215 consensus_6366#0 AAGGCTAGAAATGATGTATCTTTGCATAT--CCGACTCTCTGCTTCGATGTGGTTCGATA 358 * consensus_6366#1 GGACGCGTGGGCT-TGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACC 75 consensus_6366#2 GAACGTT---ACT-TGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACC 271 consensus_6366#0 GCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATC 418 * *** * ** ** ** * * *** * * *** ** * * * consensus_6366#1 GTGT---TCAACATGCCATACACAACCATCA--ATCCATCCAGCAGCAGCAGCAGCAGCA 130 consensus_6366#2 GTGT---TCAACATGCCATACACAACCATCA--ATCCATCCAGCAGCAGCAGCAGCAGCA 326 consensus_6366#0 ACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTG 478 ** *** * * * * * *** * ** * * ** * * consensus_6366#1 GTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAG 190 consensus_6366#2 GTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAG 386 consensus_6366#0 ATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCAC 538 * ** * * ** ** * * ** *** * * * * consensus_6366#1 TTCAATCGCATTCATCGGACAGGCAGGCAG-GCAGGCAGGCCGGACCCATAGCAAGTA-- 247 consensus_6366#2 TTCAATCGCATTCATCGGACAGGCAGGCAG-GCAGGCAGGCCGGACCCATAGCAAGTA-- 443 consensus_6366#0 TGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGG 598 * * * * *** * ** * * * **** * ***** consensus_6366#1 -ACGTCCGATGCTCGTTCGACAACTTAAACAACA-GCGTTCAGAACAGCAAGCACAATAA 305 consensus_6366#2 -ACGTCCGATGCTCGTTCGACAACTTAAACAACA-GCGTTCAGAACAGCAAGCACAATAA 501 consensus_6366#0 AATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAA 658 * * * * ** * * ** ****** ***** ** ** * * ** ** consensus_6366#1 TGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGC 365 consensus_6366#2 TGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGC 561 consensus_6366#0 ACGACAACAAATAGC-ATATTTAAGAGTAGGTGATACAC-ATACACTCAAACACGGGCAC 716 * ** ** ** ** * ** ** * *** * * * * consensus_6366#1 TTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAG 425 consensus_6366#2 TTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG------------- 608 consensus_6366#0 GTAAAAGGTGTAAAAAATG-GTAAAGCAACTGCACGATATCACGACACAATATACTAATA 775 * * ** * **** * *** * * consensus_6366#1 CTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGA 485 consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 TTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGAT---GTTA 832 consensus_6366#1 GAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTA 545 consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 GTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCA 892 consensus_6366#1 CAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCA-ACATTCTTCGAG 604 consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 CTCACGGGGGATAAGTGTGTAGGC---ATATATGGTTTTTAATTACTCACATTCACTTAA 949 consensus_6366#1 TCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGA 664 consensus_6366#2 ------------------------------------------------------------ consensus_6366#0 GTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGC-TTCCAATTCCAA 1008 consensus_6366#1 CG---- 666 consensus_6366#2 ------ consensus_6366#0 CTGTAA 1014 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||