These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 728 fasta sequence [CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCGGCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAGTATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCGATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGCCGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTCTCCCTACGACAGCACGGAA] [+] EMBL BM584789 [CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCGGCAGGAAGCAAAAGC ] [+] EMBL BM580560 [ ccgGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGCGACTGCAGGCGGCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAGTATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCGATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGCCGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTCTCCCTACGACAGCACGGAA] [+] EMBL BM632731 [ ccgCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTACAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGGGGACATCAAAAGATGGACATGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGC ] consensusID : consensus_6368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAATTTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT] [+] EMBL BM622242 [CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAATTTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT] [+] EMBL BM653934 [ ccgccgaAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6368#0 ------------------------------------------------------------ consensus_6368#1 CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAAT 60 consensus_6368#0 ------------------------------------------------------------ consensus_6368#1 TTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTA 120 consensus_6368#0 ---------CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGG 51 consensus_6368#1 CCAAACGTCTTTCGAACGCCCCGCAGTCATCGA-TGTGCTGG-TGTATTTGTAAAGTAAA 178 * * * * * ****** **** *** * ** * ** * consensus_6368#0 GCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGT-GGTTGT 110 consensus_6368#1 A---ACGTAGCTTTGTGAAATAATGCCGTTCATGCAC-TGTAGTGTACCGGATTGAGCGG 234 * * ** ***** ** * * * * ** * * * * consensus_6368#0 GGCGTGTGTGGCTCATTTTTGCTGCAAAAGCA-TACATTTGTAGCATTCAATTTTGTTTG 169 consensus_6368#1 AACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCG 294 * * * * *** ** **** *** * * * * * consensus_6368#0 GCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACC 229 consensus_6368#1 ATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACC 354 ********************************************************** consensus_6368#0 TTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATC 289 consensus_6368#1 TTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATC 414 ************************************************************ consensus_6368#0 GTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCA 349 consensus_6368#1 GTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCA 474 ************************************************************ consensus_6368#0 GTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAAC 409 consensus_6368#1 GTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAAC 534 ************************************************************ consensus_6368#0 ATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCG 469 consensus_6368#1 ATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT---------------- 578 ******************************************** consensus_6368#0 GCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAG 529 consensus_6368#1 ------------------------------------------------------------ consensus_6368#0 TATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCG 589 consensus_6368#1 ------------------------------------------------------------ consensus_6368#0 ATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGC 649 consensus_6368#1 ------------------------------------------------------------ consensus_6368#0 CGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTC 709 consensus_6368#1 ------------------------------------------------------------ consensus_6368#0 TCCCTACGACAGCACGGAA 728 consensus_6368#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||