These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1328 fasta sequence [GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC-GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGCTGCACTGGTGGTGGAGCAGCT-TCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTT-CAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATCCGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAATGACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCACTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGATACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTTCGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGCAATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCTCGGGGGGAT] [+] EMBL CNS08RSM [GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGCTTCACTGGCGGTGGAGCA CTGTCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTCGGGATGGAACTGGGTCGCTACGTAGTAGACGTGGTCTTT CAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGAT ] [+] EMBL CNS08LE0 [ TTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGTTGCACTTTTGGGGGAGCAGCT TCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAA ] [-] EMBL BX618060 [ TTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGGTCGGGCTGCACTGCTGCTGGAGCAGCT TCTGCCCATCCTTAAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGATACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGTTCTTT CAGCTCCATAATTTCCATGCGC ] [-] EMBL AL932089 [ ACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTTCCAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATCCGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAATGACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCACTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGATACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTTCGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGCAATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCTCGGGGGGAT] consensusID : consensus_6369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GCTCTATTTATTTCAAGCGTCTCACCCTTTCNGCGGCACAAGTTTAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTTACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT] [-] EMBL BX620765 [GCTCTATTTATTTCAAGCGTCTCACCCTTTCNGCGGCACAAGTTTAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTTACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6369#0 GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTC 60 consensus_6369#1 ---GCT--CTATTTATTTCAAGCGTCTC----------ACCCTTTCNGCGGCACAAGTTT 45 *** ******************** ******** ************ consensus_6369#0 AACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTT 120 consensus_6369#1 AACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTT 105 ************************************************************ consensus_6369#0 TATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCA 180 consensus_6369#1 TATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCA 165 ***************************** ********************** ****** consensus_6369#0 CAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGT 240 consensus_6369#1 CAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTT 225 ******************* *********************************** ** * consensus_6369#0 TACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTC 300 consensus_6369#1 TACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTT 285 ********************************************** ************ consensus_6369#0 ACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAA 360 consensus_6369#1 ACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAA 345 ************************************************************ consensus_6369#0 TCCGTTCCATTCGTATGCACCCCGTTCA-TTTTGATGGGCGATTCTTGCTTGCTCGGAAC 419 consensus_6369#1 TCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAAC 405 *************************** ******************************* consensus_6369#0 CGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACG 479 consensus_6369#1 CGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACG 465 ************************************************************ consensus_6369#0 CTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGG 539 consensus_6369#1 CTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT------------------------ 501 ************************************ consensus_6369#0 GCTGCACTGGTGGTGGAGCAGCTTCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGAC 599 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTC 659 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 GGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTTCAGCTCCATAATTTCCATGCG 719 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATA 779 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 GTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTA 839 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGT 899 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 TCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATC 959 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAAT 1019 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 GACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCA 1079 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGAT 1139 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 ACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTT 1199 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGC 1259 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 AATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCT 1319 consensus_6369#1 ------------------------------------------------------------ consensus_6369#0 CGGGGGGAT 1328 consensus_6369#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||